Mercurial > repos > iuc > package_bowtie_2_2_6

comparison tool_dependencies.xml @ 0:d227341ad20f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
author iuc
date Mon, 16 Nov 2015 09:42:47 -0500
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children 9d2f1e2f5919
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-1:000000000000 0:d227341ad20f
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="bowtie2" version="2.2.6">
4 <install version="1.0">
5 <actions_group>
6 <actions os="linux" architecture="x86_64">
7 <action md5sum="074884c2989437491685cfdec649d424" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-linux-x86_64.zip</action>
8 <action type="move_directory_files">
9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory>
11 </action>
12 </actions>
13 <actions os="darwin" architecture="x86_64">
14 <action md5sum="2ff07b1358844bda4b2b1055507fee5b" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-macos-x86_64.zip</action>
15 <action type="move_directory_files">
16 <source_directory>.</source_directory>
17 <destination_directory>$INSTALL_DIR</destination_directory>
18 </action>
19 </actions>
20 <actions>
21 <action md5sum="6a67cf80f4551e24c5e1430a2b2e305a" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-source.zip</action>
22 <action type="shell_command">make</action>
23 <action type="move_file">
24 <source>bowtie2</source>
25 <destination>$INSTALL_DIR/bin</destination>
26 </action>
27 <action type="move_file">
28 <source>bowtie2-build</source>
29 <destination>$INSTALL_DIR/bin</destination>
30 </action>
31 <action type="move_file">
32 <source>bowtie2-inspect</source>
33 <destination>$INSTALL_DIR/bin</destination>
34 </action>
35 <action type="move_file">
36 <source>bowtie</source>
37 <destination>$INSTALL_DIR/bin</destination>
38 </action>
39 <action type="move_file">
40 <source>bowtie-build</source>
41 <destination>$INSTALL_DIR/bin</destination>
42 </action>
43 <action type="move_file">
44 <source>bowtie-inspect</source>
45 <destination>$INSTALL_DIR/bin</destination>
46 </action>
47 </actions>
48 <action type="set_environment">
49 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
50 </action>
51 </actions_group>
52 </install>
53 <readme></readme>
54 </package>
55 </tool_dependency>