Mercurial > repos > iuc > package_bowtie_2_2_6

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 97a064489364118d108b0dd2cfb4d9bc53080837
author iuc
date Thu, 19 Nov 2015 13:05:01 -0500
parents d227341ad20f
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d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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1 <?xml version="1.0"?>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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2 <tool_dependency>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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3 <package name="bowtie2" version="2.2.6">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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4 <install version="1.0">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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5 <actions_group>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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6 <actions os="linux" architecture="x86_64">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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7 <action md5sum="074884c2989437491685cfdec649d424" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-linux-x86_64.zip</action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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8 <action type="move_directory_files">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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9 <source_directory>.</source_directory>
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9d2f1e2f5919 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 97a064489364118d108b0dd2cfb4d9bc53080837
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10 <destination_directory>$INSTALL_DIR/bin/</destination_directory>
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d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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11 </action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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12 </actions>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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13 <actions os="darwin" architecture="x86_64">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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14 <action md5sum="2ff07b1358844bda4b2b1055507fee5b" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-macos-x86_64.zip</action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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15 <action type="move_directory_files">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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16 <source_directory>.</source_directory>
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9d2f1e2f5919 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 97a064489364118d108b0dd2cfb4d9bc53080837
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17 <destination_directory>$INSTALL_DIR/bin/</destination_directory>
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d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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18 </action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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19 </actions>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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20 <actions>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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21 <action md5sum="6a67cf80f4551e24c5e1430a2b2e305a" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-source.zip</action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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22 <action type="shell_command">make</action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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23 <action type="move_file">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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24 <source>bowtie2</source>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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25 <destination>$INSTALL_DIR/bin</destination>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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26 </action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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27 <action type="move_file">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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28 <source>bowtie2-build</source>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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29 <destination>$INSTALL_DIR/bin</destination>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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30 </action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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31 <action type="move_file">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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32 <source>bowtie2-inspect</source>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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33 <destination>$INSTALL_DIR/bin</destination>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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34 </action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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35 <action type="move_file">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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36 <source>bowtie</source>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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37 <destination>$INSTALL_DIR/bin</destination>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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38 </action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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39 <action type="move_file">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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40 <source>bowtie-build</source>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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41 <destination>$INSTALL_DIR/bin</destination>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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42 </action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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43 <action type="move_file">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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44 <source>bowtie-inspect</source>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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45 <destination>$INSTALL_DIR/bin</destination>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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46 </action>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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47 </actions>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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48 <action type="set_environment">
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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49 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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50 </action>
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51 </actions_group>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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52 </install>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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53 <readme></readme>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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54 </package>
d227341ad20f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
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55 </tool_dependency>