Mercurial > repos > iuc > package_bowtie_1_1_2

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
author iuc
date Fri, 20 Nov 2015 06:44:56 -0500
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-1:000000000000 0:8584a4574ab1
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="bowtie" version="1.1.2">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url" sha256sum="b72c62bb00046d10e83ad1fb51049bb88fd8fa01745ce13c5aeadb8c008f0a73">https://codeload.github.com/BenLangmead/bowtie/zip/v1.1.2</action>
7 <action type="shell_command">make</action>
8 <action type="move_file">
9 <source>bowtie</source>
10 <destination>$INSTALL_DIR</destination>
11 </action>
12 <action type="move_file">
13 <source>bowtie-align-s</source>
14 <destination>$INSTALL_DIR</destination>
15 </action>
16 <action type="move_file">
17 <source>bowtie-align-l</source>
18 <destination>$INSTALL_DIR</destination>
19 </action>
20 <action type="move_file">
21 <source>bowtie-build</source>
22 <destination>$INSTALL_DIR</destination>
23 </action>
24 <action type="move_file">
25 <source>bowtie-build-l</source>
26 <destination>$INSTALL_DIR</destination>
27 </action>
28 <action type="move_file">
29 <source>bowtie-build-s</source>
30 <destination>$INSTALL_DIR</destination>
31 </action>
32 <action type="move_file">
33 <source>bowtie-inspect</source>
34 <destination>$INSTALL_DIR</destination>
35 </action>
36 <action type="move_file">
37 <source>bowtie-inspect-l</source>
38 <destination>$INSTALL_DIR</destination>
39 </action>
40 <action type="move_file">
41 <source>bowtie-inspect-s</source>
42 <destination>$INSTALL_DIR</destination>
43 </action>
44 <action type="set_environment">
45 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
46 </action>
47 </actions>
48 </install>
49 <readme></readme>
50 </package>
51 </tool_dependency>