comparison tool_dependencies.xml @ 2:31643745f30c draft

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author iuc
date Wed, 28 Jan 2015 02:49:39 -0500
parents 9fbaadc2f81a
children 8118aacf1600
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1:9fbaadc2f81a 2:31643745f30c
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="bzlib" version="1.0.6"> 3 <package name="bzlib" version="1.0.6">
4 <repository changeset_revision="e89ba6f88ab2" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="d971aef661a7" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="boost" version="1.55.0"> 6 <package name="boost" version="1.55.0">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">http://downloads.sourceforge.net/project/boost/boost/1.55.0/boost_1_55_0.tar.gz</action> 9 <action type="download_by_url">http://downloads.sourceforge.net/project/boost/boost/1.55.0/boost_1_55_0.tar.gz</action>
10 10
11 <!-- populate the environment variables from the dependend repos --> 11 <!-- populate the environment variables from the dependend repos -->
12 <action type="set_environment_for_install"> 12 <action type="set_environment_for_install">
13 <repository changeset_revision="e89ba6f88ab2" name="package_bzlib_1_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> 13 <repository changeset_revision="d971aef661a7" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
14 <package name="bzlib" version="1.0.6" /> 14 <package name="bzlib" version="1.0.6" />
15 </repository> 15 </repository>
16 </action> 16 </action>
17 17
18 <action type="shell_command">./bootstrap.sh</action> 18 <action type="shell_command">./bootstrap.sh</action>
19 <!-- try to set the right architecture with uname -m --> 19 <!-- try to set the right architecture with uname -m -->
20 <action type="shell_command"> 20 <action type="shell_command">
21 ./bjam address-model=64 cflags=-fPIC cxxflags=-fPIC install --prefix=$INSTALL_DIR/boost/ -sBZIP2_INCLUDE=$BZLIB_INCLUDE_DIR -sBZIP2_LIB=$BZLIB_LIB_DIR -sBZIP2_SOURCE=$BZLIB_SOURCE_DIR; 21 ./bjam address-model=64 cflags=-fPIC cxxflags=-fPIC install --prefix=$INSTALL_DIR/boost/ -sBZIP2_INCLUDE=$BZLIB_INCLUDE_DIR -sBZIP2_LIB=$BZLIB_LIB_DIR -sBZIP2_SOURCE=$BZLIB_SOURCE_DIR; 2&gt;&amp;1
22
22 </action> 23 </action>
23 <action type="set_environment"> 24 <action type="set_environment">
24 <environment_variable action="set_to" name="BOOST_ROOT_DIR">$INSTALL_DIR/boost</environment_variable> 25 <environment_variable action="set_to" name="BOOST_ROOT_DIR">$INSTALL_DIR/boost</environment_variable>
25 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/boost/lib/</environment_variable> 26 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/boost/lib/</environment_variable>
26 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/boost/include</environment_variable> 27 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/boost/include</environment_variable>
27 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/boost/include</environment_variable> 28 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/boost/include</environment_variable>
28 </action> 29 </action>
29 </actions> 30 </actions>
30 </install> 31 </install>
31 <readme> 32 <readme>
32 Compiling boost requires a C++ compiler (typically gcc). 33 Compiling boost requires a C++ compiler (typically gcc).
33 You can access the boost root directory through the $BOOST_ROOT_DIR system variable. All modules will be build. 34 You can access the boost root directory through the $BOOST_ROOT_DIR system variable. All modules will be build.
34 Development of that wrapper happens in https://github.com/bgruening/galaxytools/. 35 Development of that wrapper happens in https://github.com/bgruening/galaxytools/.
35 </readme> 36 </readme>
36 </package> 37 </package>
37 </tool_dependency> 38 </tool_dependency>