Mercurial > repos > iuc > package_blat_35x1
diff tool_dependencies.xml @ 8:e129755922bd draft
Depend on package_libpng_1_6_7 .
| author | soranzo |
|---|---|
| date | Fri, 07 Feb 2014 05:04:38 -0500 |
| parents | 55c2bd97f6b9 |
| children | 7dcd799f7b10 |
line wrap: on
line diff
--- a/tool_dependencies.xml Fri Jan 31 08:40:58 2014 -0500 +++ b/tool_dependencies.xml Fri Feb 07 05:04:38 2014 -0500 @@ -1,4 +1,8 @@ +<?xml version="1.0"?> <tool_dependency> + <package name="libpng" version="1.6.7"> + <repository changeset_revision="a0b0e0281cc4" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> <package name="blat" version="35x1"> <install version="1.0"> <actions> @@ -7,11 +11,11 @@ The problem is that the binaries are not versioned and we can't guarantee reproducibility. The source packages are versioned and are stored for a long time. --> - <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action> + <action target_filename="blatSrc.zip" type="download_by_url">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action> <action type="shell_command">export HOME=$INSTALL_DIR && mkdir -p $HOME/bin/`uname -m` && make MACHTYPE=`uname -m` && mv $INSTALL_DIR/bin/`uname -m`/* $INSTALL_DIR/bin/ && rm $INSTALL_DIR/.ccache/ -rf</action> <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/</environment_variable> - <environment_variable name="BLAT_PATH" action="set_to">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable> + <environment_variable action="set_to" name="BLAT_PATH">$INSTALL_DIR</environment_variable> </action>
