--- a/tool_dependencies.xml	Thu Jan 30 08:29:22 2014 -0500
+++ b/tool_dependencies.xml	Thu Jan 30 08:40:09 2014 -0500
@@ -8,7 +8,7 @@
                     The source packages are versioned and are stored for a long time.
                 -->
                 <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action>
-                <action type="shell_command">export HOME=$INSTALL_DIR &amp;&amp; mkdir -p $HOME/bin/$MACHTYPE &amp;&amp; make MACHTYPE=`uname -m` &amp;&amp; mv $HOME/bin/$MACHTYPE/* $HOME/bin/</action>
+                <action type="shell_command">export HOME=$INSTALL_DIR &amp;&amp; mkdir -p $HOME/bin/`uname -m` &amp;&amp; make MACHTYPE=`uname -m` &amp;&amp; mv $HOME/bin/$MACHTYPE/* $HOME/bin/</action>
                 <action type="set_environment">
                   <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/</environment_variable>
                   <environment_variable name="BLAT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
@@ -21,6 +21,19 @@
 BLAT sequence aligner from the UCSC: http://genome.ucsc.edu/FAQ/FAQblat.html
 Git development repository: http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git
 
+This reporsitory contains the following binaries:
+- blat
+- faToNib
+- faToTwoBit
+- gfClient
+- gfServer
+- nibFrag
+- pslPretty
+- pslReps
+- pslSort
+- twoBitInfo
+- twoBitToFa
+
 Please note that the BLAT source and executables are freely available for
 academic, nonprofit and personal use. Commercial licensing information is
 available on the Kent Informatics website (http://www.kentinformatics.com/).