Mercurial > repos > iuc > package_blat_35x1

comparison tool_dependencies.xml @ 5:dcd540eba336 draft

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author bgruening
date Thu, 30 Jan 2014 09:09:36 -0500
parents 2fb6c037b814
children f2c521dc5ee5
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4:2fb6c037b814 5:dcd540eba336
6 Thanks to Nicola Soranzo. 6 Thanks to Nicola Soranzo.
7 The problem is that the binaries are not versioned and we can't guarantee reproducibility. 7 The problem is that the binaries are not versioned and we can't guarantee reproducibility.
8 The source packages are versioned and are stored for a long time. 8 The source packages are versioned and are stored for a long time.
9 --> 9 -->
10 <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action> 10 <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action>
11 <action type="shell_command">export HOME=$INSTALL_DIR &amp;&amp; mkdir -p $HOME/bin/`uname -m` &amp;&amp; make MACHTYPE=`uname -m` &amp;&amp; mv $HOME/bin/`uname -m`/* $HOME/bin/</action> 11 <action type="shell_command">export HOME=$INSTALL_DIR &amp;&amp; mkdir -p $HOME/bin/`uname -m` &amp;&amp; make MACHTYPE=`uname -m` &amp;&amp; mv $HOME/bin/`uname -m`/* $HOME/bin/ &amp;&amp; rm $HOME/.ccache/</action>
12 <action type="set_environment"> 12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/</environment_variable> 13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/</environment_variable>
14 <environment_variable name="BLAT_PATH" action="set_to">$INSTALL_DIR</environment_variable> 14 <environment_variable name="BLAT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
15 </action> 15 </action>
16 16