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Adding sha256sum for NCBI BLAST+ 2.3.0 packages First downloaded and checked the NCBI provided MD5 checksums from ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.3.0/ $ sha256sum ncbi-blast-2.3.0+-*.gz 5be45df95d815f7a99d9d05d7626166e610a2950f907d859725b595832fa3be9 ncbi-blast-2.3.0+-universal-macosx.tar.gz eef6f4cd88b597d80d04b97c42d8a0e82b24034b715d1627a7fbededb222d6c0 ncbi-blast-2.3.0+-x64-linux.tar.gz See IUC packaging best practises for more details, http://galaxy-iuc-standards.readthedocs.org/en/latest/best_practices/package_xml.html
author peterjc
date Tue, 08 Mar 2016 09:59:50 -0500
parents 5703ce87be7a
children d0e971394e93
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<?xml version='1.0' encoding='utf-8'?>
<tool_dependency>
    <package name="blast+" version="2.3.0">
        <install version="1.0">
            <actions_group>
                <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
                <actions os="darwin" architecture="x86_64">
                    <action type="download_by_url" sha256sum="5be45df95d815f7a99d9d05d7626166e610a2950f907d859725b595832fa3be9">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.3.0/ncbi-blast-2.3.0+-universal-macosx.tar.gz</action>
                    <action type="move_directory_files">
                         <source_directory>bin</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
                     </action>
                </actions>
                <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. -->
                <actions os="darwin" architecture="i386">
                    <action type="download_by_url" sha256sum="5be45df95d815f7a99d9d05d7626166e610a2950f907d859725b595832fa3be9">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.3.0/ncbi-blast-2.3.0+-universal-macosx.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
                <actions os="linux" architecture="x86_64">
                    <action type="download_by_url" sha256sum="eef6f4cd88b597d80d04b97c42d8a0e82b24034b715d1627a7fbededb222d6c0">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.3.0/ncbi-blast-2.3.0+-x64-linux.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <actions>
                    <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
                    <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
                    <action type="shell_command">uname</action>
                    <action type="shell_command">arch</action>
                    <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
                    <action type="shell_command">false</action>
                    <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
                </actions>
                <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme>
Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI,
which is faster than performing a local compilation, avoids any issues with build
dependencies, and is more reproducible between installations as there is no
variability from the compiler or library versions.

Note that NCBI do not provide 32 bit Linux binaries anymore.

For more details, see:
http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
        </readme>
    </package>
</tool_dependency>