Mercurial > repos > iuc > package_blast_plus_2_2_30
comparison tool_dependencies.xml @ 0:f69b90d89b62 draft
Uploaded first version, based on BLAST+ 2.2.29 definition.
| author | iuc |
|---|---|
| date | Thu, 30 Oct 2014 13:37:18 -0400 |
| parents | |
| children | 590e57af1705 |
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| -1:000000000000 | 0:f69b90d89b62 |
|---|---|
| 1 <?xml version='1.0' encoding='utf-8'?> | |
| 2 <tool_dependency> | |
| 3 <package name="blast+" version="2.2.30"> | |
| 4 <install version="1.0"> | |
| 5 <actions_group> | |
| 6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. --> | |
| 7 <actions os="darwin" architecture="x86_64"> | |
| 8 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-universal-macosx.tar.gz</action> | |
| 9 <action type="move_directory_files"> | |
| 10 <source_directory>bin</source_directory> | |
| 11 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 12 </action> | |
| 13 </actions> | |
| 14 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. --> | |
| 15 <actions os="darwin" architecture="i386"> | |
| 16 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-universal-macosx.tar.gz</action> | |
| 17 <action type="move_directory_files"> | |
| 18 <source_directory>bin</source_directory> | |
| 19 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 20 </action> | |
| 21 </actions> | |
| 22 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> | |
| 23 <actions os="linux" architecture="x86_64"> | |
| 24 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action> | |
| 25 <action type="move_directory_files"> | |
| 26 <source_directory>bin</source_directory> | |
| 27 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 28 </action> | |
| 29 </actions> | |
| 30 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). --> | |
| 31 <actions os="linux" architecture="i386"> | |
| 32 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-ia32-linux.tar.gz</action> | |
| 33 <action type="move_directory_files"> | |
| 34 <source_directory>bin</source_directory> | |
| 35 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 36 </action> | |
| 37 </actions> | |
| 38 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). --> | |
| 39 <actions os="linux" architecture="i686"> | |
| 40 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-ia32-linux.tar.gz</action> | |
| 41 <action type="move_directory_files"> | |
| 42 <source_directory>bin</source_directory> | |
| 43 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 44 </action> | |
| 45 </actions> | |
| 46 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> | |
| 47 <actions> | |
| 48 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> | |
| 49 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> | |
| 50 <action type="shell_command">uname</action> | |
| 51 <action type="shell_command">arch</action> | |
| 52 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action> | |
| 53 <action type="shell_command">false</action> | |
| 54 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
| 55 </actions> | |
| 56 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
| 57 <action type="set_environment"> | |
| 58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
| 59 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> | |
| 60 </action> | |
| 61 </actions_group> | |
| 62 </install> | |
| 63 <readme> | |
| 64 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ | |
| 65 binaries from the NCBI, which is faster than performing a local compliation, | |
| 66 avoids any issues with build dependencies, and is more reproducible between | |
| 67 installations as there is no variability from the compiler or library versions. | |
| 68 | |
| 69 For more details, see: | |
| 70 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download | |
| 71 </readme> | |
| 72 </package> | |
| 73 </tool_dependency> |