Mercurial > repos > iuc > package_blast_plus_2_2_30
annotate tool_dependencies.xml @ 3:b4030d9375b2 draft default tip
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_30/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
| author | peterjc |
|---|---|
| date | Fri, 03 Feb 2017 12:36:03 -0500 |
| parents | 6b84c917eb9e |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version='1.0' encoding='utf-8'?> |
| 2 <tool_dependency> | |
| 3 <package name="blast+" version="2.2.30"> | |
| 4 <install version="1.0"> | |
| 5 <actions_group> | |
| 6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. --> | |
| 7 <actions os="darwin" architecture="x86_64"> | |
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b4030d9375b2
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_30/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
peterjc
parents:
2
diff
changeset
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8 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-universal-macosx.tar.gz --> |
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b4030d9375b2
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_30/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
peterjc
parents:
2
diff
changeset
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9 <action type="download_by_url" sha256sum="5ecd357f4094c9e26202de59d0947a30d483c6ef0a6670faa13051602835c3ca" target_filename="ncbi-blast-2.2.30+-universal-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.30_darwin_all.tar.gz</action> |
| 0 | 10 <action type="move_directory_files"> |
| 11 <source_directory>bin</source_directory> | |
| 12 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 13 </action> | |
| 14 </actions> | |
| 15 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. --> | |
| 16 <actions os="darwin" architecture="i386"> | |
|
3
b4030d9375b2
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_30/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
peterjc
parents:
2
diff
changeset
|
17 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-universal-macosx.tar.gz --> |
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b4030d9375b2
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_30/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
peterjc
parents:
2
diff
changeset
|
18 <action type="download_by_url" sha256sum="5ecd357f4094c9e26202de59d0947a30d483c6ef0a6670faa13051602835c3ca" target_filename="ncbi-blast-2.2.30+-universal-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.30_darwin_all.tar.gz</action> |
| 0 | 19 <action type="move_directory_files"> |
| 20 <source_directory>bin</source_directory> | |
| 21 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 22 </action> | |
| 23 </actions> | |
| 24 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> | |
| 25 <actions os="linux" architecture="x86_64"> | |
|
3
b4030d9375b2
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_30/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
peterjc
parents:
2
diff
changeset
|
26 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz --> |
|
b4030d9375b2
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_30/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
peterjc
parents:
2
diff
changeset
|
27 <action type="download_by_url" sha256sum="1e6f2080b09bd5d272d9652c63bcb25abc0b16ffd36bd25973afb31f0387e792" target_filename="ncbi-blast-2.2.30+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.30_linux_x64.tar.gz</action> |
| 0 | 28 <action type="move_directory_files"> |
| 29 <source_directory>bin</source_directory> | |
| 30 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 31 </action> | |
| 32 </actions> | |
| 33 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). --> | |
| 34 <actions os="linux" architecture="i386"> | |
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3
b4030d9375b2
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_30/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
peterjc
parents:
2
diff
changeset
|
35 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-ia32-linux.tar.gz --> |
|
b4030d9375b2
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_30/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
peterjc
parents:
2
diff
changeset
|
36 <action type="download_by_url" sha256sum="3ebc0284391c5fa6465c60ad9d292d9d46b783fbea1f0c3a99e9838c60c1d2d3" target_filename="ncbi-blast-2.2.30+-ia32-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.30_linux_x32.tar.gz</action> |
| 0 | 37 <action type="move_directory_files"> |
| 38 <source_directory>bin</source_directory> | |
| 39 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 40 </action> | |
| 41 </actions> | |
| 42 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). --> | |
| 43 <actions os="linux" architecture="i686"> | |
|
3
b4030d9375b2
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_30/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
peterjc
parents:
2
diff
changeset
|
44 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-ia32-linux.tar.gz --> |
|
b4030d9375b2
planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_30/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
peterjc
parents:
2
diff
changeset
|
45 <action type="download_by_url" sha256sum="3ebc0284391c5fa6465c60ad9d292d9d46b783fbea1f0c3a99e9838c60c1d2d3" target_filename="ncbi-blast-2.2.30+-ia32-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.30_linux_x32.tar.gz</action> |
| 0 | 46 <action type="move_directory_files"> |
| 47 <source_directory>bin</source_directory> | |
| 48 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 49 </action> | |
| 50 </actions> | |
| 51 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> | |
| 52 <actions> | |
| 53 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> | |
| 54 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> | |
| 55 <action type="shell_command">uname</action> | |
| 56 <action type="shell_command">arch</action> | |
| 57 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action> | |
| 58 <action type="shell_command">false</action> | |
| 59 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
| 60 </actions> | |
| 61 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
| 62 <action type="set_environment"> | |
| 63 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
| 64 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> | |
| 65 </action> | |
| 66 </actions_group> | |
| 67 </install> | |
| 68 <readme> | |
| 69 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ | |
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590e57af1705
planemo upload for repository https://github.com/peterjc/galaxy_blast/packages/package_blast_plus_2_2_30 commit 063f4151ba912a5a2b2fd9cc5d801d5d86be36c0
peterjc
parents:
0
diff
changeset
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70 binaries from the NCBI, which is faster than performing a local compilation, |
| 0 | 71 avoids any issues with build dependencies, and is more reproducible between |
| 72 installations as there is no variability from the compiler or library versions. | |
| 73 | |
| 74 For more details, see: | |
| 75 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download | |
| 76 </readme> | |
| 77 </package> | |
| 78 </tool_dependency> |