Mercurial > repos > iuc > package_blast_plus_2_2_28

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planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_28/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
author peterjc
date Fri, 03 Feb 2017 12:35:15 -0500
parents 629137b8979c
children
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <tool_dependency>
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3 <package name="blast+" version="2.2.28">
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4 <install version="1.0">
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5 <actions_group>
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6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
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7 <actions os="darwin" architecture="x86_64">
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8 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28+-universal-macosx.tar.gz -->
9f3860307d75 planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_28/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty
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9 <action type="download_by_url" sha256sum="acd42e73051764cf0cb3889cd551b4a0787d86c1de5851522258fb2074dcea2a" target_filename="ncbi-blast-2.2.28+-universal-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.28_darwin_all.tar.gz</action>
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10 <action type="move_directory_files">
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11 <source_directory>bin</source_directory>
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12 <destination_directory>$INSTALL_DIR</destination_directory>
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13 </action>
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14 </actions>
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15 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. -->
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16 <actions os="darwin" architecture="i386">
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17 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28+-universal-macosx.tar.gz -->
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18 <action type="download_by_url" sha256sum="acd42e73051764cf0cb3889cd551b4a0787d86c1de5851522258fb2074dcea2a" target_filename="ncbi-blast-2.2.28+-universal-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.28_darwin_all.tar.gz</action>
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19 <action type="move_directory_files">
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20 <source_directory>bin</source_directory>
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21 <destination_directory>$INSTALL_DIR</destination_directory>
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22 </action>
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23 </actions>
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24 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
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25 <actions os="linux" architecture="x86_64">
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26 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28+-x64-linux.tar.gz -->
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27 <action type="download_by_url" sha256sum="816f5d30eddb0ab9337cee949a7a9f767fb1fb6396f987a9bf0a611614744bb9" target_filename="ncbi-blast-2.2.28+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.28_linux_x64.tar.gz</action>
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28 <action type="move_directory_files">
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29 <source_directory>bin</source_directory>
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30 <destination_directory>$INSTALL_DIR</destination_directory>
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31 </action>
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32 </actions>
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33 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). -->
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34 <actions os="linux" architecture="i386">
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35 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28+-ia32-linux.tar.gz -->
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36 <action type="download_by_url" sha256sum="70c9dd9e7555271add39d34b27e247cccaa16f3829dbca2864854f7ad696ecbe" target_filename="ncbi-blast-2.2.28+-ia32-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.28_linux_x32.tar.gz</action>
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37 <action type="move_directory_files">
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38 <source_directory>bin</source_directory>
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39 <destination_directory>$INSTALL_DIR</destination_directory>
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40 </action>
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41 </actions>
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42 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). -->
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43 <actions os="linux" architecture="i686">
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44 <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28+-ia32-linux.tar.gz -->
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45 <action type="download_by_url" sha256sum="70c9dd9e7555271add39d34b27e247cccaa16f3829dbca2864854f7ad696ecbe" target_filename="ncbi-blast-2.2.28+-ia32-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.28_linux_x32.tar.gz</action>
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46 <action type="move_directory_files">
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47 <source_directory>bin</source_directory>
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48 <destination_directory>$INSTALL_DIR</destination_directory>
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49 </action>
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50 </actions>
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51 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
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52 <actions>
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53 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
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54 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
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55 <action type="shell_command">uname</action>
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56 <action type="shell_command">arch</action>
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57 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
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58 <action type="shell_command">false</action>
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59 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
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60 </actions>
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61 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
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62 <action type="set_environment">
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63 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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64 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
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65 </action>
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66 </actions_group>
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67 </install>
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68 <readme>
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69 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+
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70 binaries from the NCBI, which is faster than performing a local compilation,
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71 avoids any issues with build dependencies, and is more reproducible between
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72 installations as there is no variability from the compiler or library versions.
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73
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74 For more details, see:
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75 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
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76 </readme>
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77 </package>
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78 </tool_dependency>