Mercurial > repos > iuc > package_blast_plus_2_2_26

comparison tool_dependencies.xml @ 3:c85236cd100d draft

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Close the shell command
author peterjc
date Wed, 14 Aug 2013 09:15:52 -0400
parents 0e536576294c
children c83440a9bdfb
comparison
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2:0e536576294c 3:c85236cd100d
13 if [[ "$(uname)" == "Darwin" ]]; then export FILENAME="ncbi-blast-2.2.26+-universal-macosx.tar.gz"; fi && 13 if [[ "$(uname)" == "Darwin" ]]; then export FILENAME="ncbi-blast-2.2.26+-universal-macosx.tar.gz"; fi &&
14 echo Fetching $FILENAME && 14 echo Fetching $FILENAME &&
15 if [[ "$(uname)" == "Linux" ]]; then wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/$FILENAME; fi && 15 if [[ "$(uname)" == "Linux" ]]; then wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/$FILENAME; fi &&
16 if [[ "$(uname)" == "Darwin" ]]; then curl -O ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/$FILENAME; fi && 16 if [[ "$(uname)" == "Darwin" ]]; then curl -O ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/$FILENAME; fi &&
17 tar -zxvf $FILENAME && 17 tar -zxvf $FILENAME &&
18 echo Downloaded and decompressed
18 </action> 19 </action>
19 <!-- move the binaries to the installation directory which is now on the $PATH --> 20 <!-- move the binaries to the installation directory which is now on the $PATH -->
20 <action type="move_directory_files"> 21 <action type="move_directory_files">
21 <source_directory>ncbi-blast-2.2.26+/bin</source_directory> 22 <source_directory>ncbi-blast-2.2.26+/bin</source_directory>
22 <destination_directory>$INSTALL_DIR</destination_directory> 23 <destination_directory>$INSTALL_DIR</destination_directory>