Mercurial > repos > iuc > package_biopython_1_61
annotate tool_dependencies.xml @ 3:8765513cf5cc draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_biopython_1_61 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
| author | iuc |
|---|---|
| date | Fri, 09 Oct 2015 05:12:35 -0400 |
| parents | c0ed4be42273 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="numpy" version="1.7.1"> | |
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8765513cf5cc
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_biopython_1_61 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
2
diff
changeset
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4 <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 6 <package name="biopython" version="1.61"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.61.tar.gz</action> | |
| 10 <action type="set_environment_for_install"> | |
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3
8765513cf5cc
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_biopython_1_61 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
iuc
parents:
2
diff
changeset
|
11 <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 0 | 12 <package name="numpy" version="1.7.1" /> |
| 13 </repository> | |
| 14 </action> | |
| 15 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 16 <action type="shell_command"> | |
| 17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | |
| 18 export PATH=$PATH:$PATH_NUMPY && | |
| 19 export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_MATPLOTLIB && | |
| 20 python setup.py install --install-lib $INSTALL_DIR/lib/python | |
| 21 </action> | |
| 22 <action type="set_environment"> | |
| 23 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
| 24 | |
| 25 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> | |
| 26 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> | |
| 27 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> | |
| 28 | |
| 29 <environment_variable action="set_to" name="PYTHONPATH_BIOPYTHON">$INSTALL_DIR/lib/python</environment_variable> | |
| 30 </action> | |
| 31 </actions> | |
| 32 </install> | |
| 33 <readme>The PYTHONPATH for biopython can be accessed through PYTHONPATH_BIOPYTHON.</readme> | |
| 34 </package> | |
| 35 </tool_dependency> |