Mercurial > repos > iuc > package_bedtools_2_17_0

view tool_dependencies.xml @ 1:1607825427da draft default tip

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author iuc
date Wed, 21 May 2014 23:20:03 -0400
parents 5549e6124e48
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<?xml version="1.0"?>
<tool_dependency>
    <package name="package_bedtools" version="2.17.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="move_directory_files">
                    <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>                
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>

Genuine IUC/Frobozz Magic co recipe to install Aaron Quinlan's Bedtools code to accompany his Galaxy wrappers.
ross lazarus May 2014
                
        </readme>
    </package>

</tool_dependency>