Mercurial > repos > iuc > package_bcftools_1_2

comparison tool_dependencies.xml @ 1:c1cd1b1ab6b2 draft default tip

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planemo upload for repository https://github.com/davebx/tools-iuc/blob/master/packages/package_bcftools_1_2/ commit 97a064489364118d108b0dd2cfb4d9bc53080837
author iuc
date Thu, 19 Nov 2015 12:58:34 -0500
parents cb6cd479c02e
children
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0:cb6cd479c02e 1:c1cd1b1ab6b2
12 <source_directory>.</source_directory> 12 <source_directory>.</source_directory>
13 <destination_directory>$INSTALL_DIR</destination_directory> 13 <destination_directory>$INSTALL_DIR</destination_directory>
14 </action> 14 </action>
15 </actions> 15 </actions>
16 <actions> 16 <actions>
17 <action type="download_by_url">https://github.com/samtools/bcftools/releases/download/1.2/bcftools-1.2.tar.bz2</action>
17 <action type="set_environment_for_install"> 18 <action type="set_environment_for_install">
18 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 19 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
19 <package name="zlib" version="1.2.8" /> 20 <package name="zlib" version="1.2.8" />
20 </repository> 21 </repository>
21 </action> 22 </action>
22 <action type="download_by_url">https://github.com/samtools/bcftools/releases/download/1.2/bcftools-1.2.tar.bz2</action>
23 <action type="shell_command">sed -i.bak 's#/usr/local#$INSTALL_DIR#' Makefile</action> 23 <action type="shell_command">sed -i.bak 's#/usr/local#$INSTALL_DIR#' Makefile</action>
24 <action type="make_install" /> 24 <action type="make_install" />
25 </actions> 25 </actions>
26 <action type="set_environment"> 26 <action type="set_environment">
27 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 27 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>