Mercurial > repos > iuc > package_augustus_3_1

comparison tool_dependencies.xml @ 0:820bf3789c44 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
author iuc
date Thu, 21 May 2015 17:05:50 -0400
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="augustus" version="3.1">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.1.tar.gz</action>
7 <action type="shell_command">make</action>
8 <action type="move_directory_files">
9 <source_directory>bin</source_directory>
10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
11 </action>
12 <action type="move_directory_files">
13 <source_directory>scripts</source_directory>
14 <destination_directory>$INSTALL_DIR/scripts</destination_directory>
15 </action>
16 <action type="move_directory_files">
17 <source_directory>config</source_directory>
18 <destination_directory>$INSTALL_DIR/config</destination_directory>
19 </action>
20 <action type="set_environment">
21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
23 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable>
24 </action>
25 </actions>
26 </install>
27 <readme>AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller.
28 It can be used as an ab initio program, which means it bases its prediction purely on the
29 sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources
30 such as EST, MS/MS, protein alignments and synthenic genomic alignments.
31 http://augustus.gobics.de/binaries/README.TXT</readme>
32 </package>
33 </tool_dependency>