Mercurial > repos > iuc > package_augustus_3_1

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 97a064489364118d108b0dd2cfb4d9bc53080837
author iuc
date Thu, 19 Nov 2015 12:56:39 -0500
parents 946032422e98
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820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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1 <?xml version="1.0"?>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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2 <tool_dependency>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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3 <package name="augustus" version="3.1">
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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4 <install version="1.0">
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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5 <actions>
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946032422e98 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit a07cb10e840db61500822627bf8c8addf29d9f4f
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6 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/old/augustus-3.1.tar.gz</action>
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820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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7 <action type="shell_command">make</action>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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8 <action type="move_directory_files">
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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9 <source_directory>bin</source_directory>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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11 </action>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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12 <action type="move_directory_files">
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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13 <source_directory>scripts</source_directory>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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14 <destination_directory>$INSTALL_DIR/scripts</destination_directory>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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15 </action>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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16 <action type="move_directory_files">
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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17 <source_directory>config</source_directory>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
iuc
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18 <destination_directory>$INSTALL_DIR/config</destination_directory>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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19 </action>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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20 <action type="set_environment">
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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50ac18031f40 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 97a064489364118d108b0dd2cfb4d9bc53080837
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23 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable>
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820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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24 </action>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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25 </actions>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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26 </install>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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27 <readme>AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller.
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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28 It can be used as an ab initio program, which means it bases its prediction purely on the
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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29 sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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30 such as EST, MS/MS, protein alignments and synthenic genomic alignments.
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1d324022239b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 936ca4b4641eae2bdfa93885f35f5a9263f9dae1
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31 </readme>
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820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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32 </package>
820bf3789c44 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit 6adc337a790cc627fd8f488459878d0417654328
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33 </tool_dependency>