Mercurial > repos > iuc > orthofinder_onlygroups
diff orthofinder_only_groups.xml @ 3:6e86e222b87f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit c39323361ef6ba2664646e4476736c80bcd01124"
| author | iuc |
|---|---|
| date | Wed, 18 Dec 2019 20:23:06 +0000 |
| parents | e5705586938b |
| children | 760ce54f8f9e |
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--- a/orthofinder_only_groups.xml Tue Mar 06 11:09:30 2018 -0500 +++ b/orthofinder_only_groups.xml Wed Dec 18 20:23:06 2019 +0000 @@ -2,8 +2,9 @@ <description>finds orthogroups in a set of proteomes</description> <requirements> <requirement type="package" version="2.1.2">orthofinder</requirement> + <requirement type="package" version="2.34">util-linux</requirement> </requirements> - <command> + <command detect_errors="exit_code"> <![CDATA[ ## prepare inputs #if $init.start == "fasta": @@ -400,7 +401,7 @@ ====================== Full readme at https://github.com/davidemms/OrthoFinder/blob/master/README.md -Summary sketch at https://github.com/davidemms/OrthoFinder/blob/master/OrthoFinder-options.pdf +Summary sketch at https://github.com/davidemms/OrthoFinder/blob/master/OrthoFinder-manual.pdf OrthoFinder is a fast, accurate and comprehensive analysis tool for comparative genomics. It finds orthologues and orthogroups infers gene trees for all orthogroups and infers a rooted species tree for the species being analysed. OrthoFinder also provides comprehensive statistics for comparative genomic analyses. OrthoFinder is simple to use and all you need to run it is a set of protein sequence files (one per species) in FASTA format (Emms, D.M. and Kelly, S., 2015).