Mercurial > repos > iuc > orthofinder_onlygroups

comparison test-data/inputs/no_fa_ext/ApApomp_trinity @ 1:60df55ef7699 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 649c01600172bcd42e740a0159cc91894d8e89ca
author iuc
date Sun, 03 Dec 2017 04:30:23 -0500
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comparison
equal deleted inserted replaced
0:1b0000af344e 1:60df55ef7699
1 >Gene.41::Ap101_1/1_1.000_309::g.41::m.41 Gene.41::Ap101_1/1_1.000_309::g.41 ORF type:internal len:104 (+) Ap101_1/1_1.000_309:1-309(+)
2 VCVCVCARCVCVCATCKLCTWCVPKEKLLKHNGPPIDHNDPTTKQNLGHFISRTIWKLNS
3 SLSNCNHSPRTHNHSSPSSPGEFKFTVNNEDKGIFVCQIKVEQ
4 >Gene.42::Ap102_1/1_1.000_382::g.42::m.42 Gene.42::Ap102_1/1_1.000_382::g.42 ORF type:internal len:128 (+) Ap102_1/1_1.000_382:1-381(+)
5 TDEYDPQRPNDYESYIKMRKDQRQREREEERKRELEEREKRRRERHRDEYDSDEDDEFNR
6 KRRRSRRDDDDDHRRSSEHKARGAAIAPPQSLIESSKPDPKEVSLPQPENKLTLNTGEYG
7 GGFSVGK
8 >Gene.43::Ap108_1/1_1.000_314::g.43::m.43 Gene.43::Ap108_1/1_1.000_314::g.43 ORF type:internal len:105 (+) Ap108_1/1_1.000_314:1-312(+)
9 LDDMDIFNSPPLGIFSVIRKMPDAAELEKTMSLYDRIQRDLELAEMTYPPQNAFEEWSRW
10 TKEGKMWIYPVDNEQGMEEEANVGFHEHVFLDHMLEDFPKRGPV
11 >Gene.7::Ap10_1/1_1.000_338::g.7::m.7 Gene.7::Ap10_1/1_1.000_338::g.7 ORF type:internal len:113 (+) Ap10_1/1_1.000_338:1-336(+)
12 PYSAAKTTAQAATDDLKRRQEELERKAEELQRKEQELQRNMGHQARVNNFPPLPEKCCVQ
13 PCFYQDFELDIPLEFQRIVKTVYYVWIAYICLLILNVLGTLAYFIAASKAGH
14 >Gene.8::Ap11_1/1_1.000_406::g.8::m.8 Gene.8::Ap11_1/1_1.000_406::g.8 ORF type:internal len:136 (+) Ap11_1/1_1.000_406:1-405(+)
15 EVPSVAVPGVVSTVVQDSAHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKDSATGLS
16 KGYAFCEYLDPSITDQACAGLNGMQLGDKKLIVQRASVGAKNAQGGPNVLPVQLQIPGLN
17 MAQVQGPGPTTEVLC
18 >Gene.9::Ap12_1/1_1.000_582::g.9::m.9 Gene.9::Ap12_1/1_1.000_582::g.9 ORF type:internal len:195 (+) Ap12_1/1_1.000_582:1-582(+)
19 DGVALFCFLHAFYLVKTQPLLLSLFMFVVVLFCYFLSSRPDTMLSHKHEVIGRFPSMSTY
20 IYFSPLLVHPSIHSSTCLSSTPFWLLLASAVAVVIVGGGGDVSSVGVDGHSSQRHLSASG
21 GVGLFRCRSTSCAERHLATRMRYDVARPPLKSPVIGPHTHTHSCNNKTDKTLALLRIQSL
22 FNRLALVHVTIWGR
23 >Gene.11::Ap13_1/1_1.000_481::g.11::m.11 Gene.11::Ap13_1/1_1.000_481::g.11 ORF type:internal len:161 (+) Ap13_1/1_1.000_481:1-480(+)
24 VESRAVKKMSLVDAIRNGLYDQEHGTISDPNTATDMTVLEAINKGLIDTKNIRVNVPGTS
25 EIISIDSALAENILDPLSGVLSNPATGECVDLLEAEQAGLMFVGVSEEQLKQPDLKQIVT
26 EGLCDPDSGTIQDPDTGKNMTVIEAMQTGLVDSTAPLLTV
27 >Gene.13::Ap18_1/1_1.000_318::g.13::m.13 Gene.13::Ap18_1/1_1.000_318::g.13 ORF type:internal len:107 (+) Ap18_1/1_1.000_318:1-318(+)
28 PACKTPFYFVCQSRSKVTTVVSEKHTDAELVHTLCIRHRSTVAWDILAGERAKFSQPRAE
29 SVSSASDWRVFGSDRRSIGRVPSIDLCPFSASRRICLHSGRRPSQP
30 >Gene.14::Ap19_1/1_1.000_302::g.14::m.14 Gene.14::Ap19_1/1_1.000_302::g.14 ORF type:internal len:101 (+) Ap19_1/1_1.000_302:1-300(+)
31 PAIVQRASGLAMSEIYHLRFCDGDRLNVSCPDNWQIHISSSYFVYVSGVDGRGVRDCRQQ
32 FNGTSQCLRKIQFYDPTYFGQLIQSCQSKQRCDDGLLAKT
33 >Gene.15::Ap20_1/1_1.000_780::g.15::m.15 Gene.15::Ap20_1/1_1.000_780::g.15 ORF type:internal len:261 (+) Ap20_1/1_1.000_780:1-780(+)
34 HEGPVWQVAWAHPMFGNLIASCSYDRKVIIWKETGGTWAKLYEYNNHDSSVNSVCWAPYE
35 FGLMLACGSSDGSVSVISSTGDGTWDSKKINNAHRIGCNAVSWGPAVQHGALLDPSGSQK
36 PVKRFVTGGCDNLVKIWKEENDQWIEEQKLDGHCDWVRDVAWAPSIGLPRTVIASCSQDC
37 QVIIWTNDGSGNWTSKVLHKFNAAVWHVSWSVTGNILAVSGGDNKVSLWKETIEGQWVCV
38 SDVNKGHGQGQITENKSVVS
39 >Gene.16::Ap21_1/1_1.000_468::g.16::m.16 Gene.16::Ap21_1/1_1.000_468::g.16 ORF type:internal len:157 (+) Ap21_1/1_1.000_468:1-468(+)
40 AAIQNAKYIIAQVNPNMPRTFGDGVIHMSHCDAMVQVTDPLPEIHVSKCTEVETKIGKFI
41 ADNLVHDGATLQMGIGSIPDAVLAQLGEHRDIGIHTEMFSDGVIDLVMKGVITNSKKVIQ
42 TGKILSSFAFGTKKLYNFMNNNPFVVMCDVAFVNNT
43 >Gene.18::Ap23_1/1_1.000_307::g.18::m.18 Gene.18::Ap23_1/1_1.000_307::g.18 ORF type:internal len:103 (-) Ap23_1/1_1.000_307:1-306(-)
44 CVTTIPVITEAVYCVSIKWVPRIIVPGWLTVSMSLYCRKFLSDTCVVSQCHQTFPDVLLI
45 TSSFLDNLDAEIFSSSFASVRTRPPSLKTNVYFFSTTWLVTL
46 >Gene.19::Ap32_1/1_1.000_302::g.19::m.19 Gene.19::Ap32_1/1_1.000_302::g.19 ORF type:internal len:101 (+) Ap32_1/1_1.000_302:1-300(+)
47 FLEEIKIAACDKEKRLSDLGEKVRQLEAQLAQQIKECEMKDFSLQQEMAKCAELTAAIQG
48 KEATISELSTGLTEKTNQMMMMLNENQQKAEHIEALQTET
49 >Gene.20::Ap33_1/1_1.000_569::g.20::m.20 Gene.20::Ap33_1/1_1.000_569::g.20 ORF type:internal len:190 (+) Ap33_1/1_1.000_569:1-567(+)
50 CNSDAPGNIGNHCFHSNVIGTTSHDNITPHQVQNYQYQSPSMTSSMTSSSSLVSSMNNSS
51 MGSPQVYANQMDSANANSPMSRSYDGGLTYAQYKNQLRPKGGFYSQYSGDHPSSTSSSTE
52 SLNSKCSVSSNNTSQPSEVTRRPISTSKGHVAQAINRFSQPVTQASNTNNVNRVETGTSS
53 TGSVSIMPS
54 >Gene.21::Ap34_1/1_1.000_337::g.21::m.21 Gene.21::Ap34_1/1_1.000_337::g.21 ORF type:internal len:113 (+) Ap34_1/1_1.000_337:1-336(+)
55 KQLTVCTEGQFKCANHHCISASSVCDKYDDCGDMSDEIGCHKDSSEGCSVNNGGCEQNCT
56 DLPDKGHVCHCDPGYIVNQDDKTSCSDVDECASWGNKCSQICHNIKGSYKCA
57 >Gene.22::Ap35_1/1_1.000_319::g.22::m.22 Gene.22::Ap35_1/1_1.000_319::g.22 ORF type:internal len:107 (+) Ap35_1/1_1.000_319:1-318(+)
58 AEAMMDKIETFNVPRDLSEILAQSYENVKMIVMTQHEVKSERFESKVILLTDCRLIITST
59 KIPCKEEQSFNLLGIRSLESKTSSRLNFSADGKQWSFMISDTDRID
60 >Gene.23::Ap36_1/1_1.000_303::g.23::m.23 Gene.23::Ap36_1/1_1.000_303::g.23 ORF type:internal len:102 (+) Ap36_1/1_1.000_303:1-303(+)
61 GKGIRTVAPPPGVGSARVRRDSALSDEEDVFHEDSKPTSPPAAHSPPKPKEEKILVPAPP
62 PKENIWEKRKTGSSPSGSGTSQPSETSTELDEHHEPSNEYS
63 >Gene.1::Ap3_1/1_1.000_546::g.1::m.1 Gene.1::Ap3_1/1_1.000_546::g.1 ORF type:internal len:183 (+) Ap3_1/1_1.000_546:1-546(+)
64 AMQYTGLLLFCLFALTAAKPAEDLQMLIRALLHEIEEEGELQERGIGAVKYGGTNVGEDY
65 VEVKVIRNMEEVKADQKSHKPLYSLIYGKGTHDPNSSQHSLTSWTWSQLDKCQNGAEGCF
66 MIRNLKPNTEYWFQLEVQMWINGAYEYIESRKDVEQIRTKGRQENAPWMSSKSYKPDADI
67 RT
68 >Gene.25::Ap43_1/1_1.000_684::g.25::m.25 Gene.25::Ap43_1/1_1.000_684::g.25 ORF type:internal len:229 (+) Ap43_1/1_1.000_684:1-684(+)
69 PSEVTKLQKTEMTAAQSKKLASGPMEDVGCEHDDSLPKIADGQVGKESVEQGISIMEYDT
70 EPGSKISHGVPERGRTHTRTSAGNVVESKLELEFNQSLTDMEVAQITDAAEARRKAREAA
71 RAQRLWHKKMIEEGKDPRVMLKSRSHSSPSPDTYTIVVEGSAEVNTSKDKVVSISPTQVQ
72 GEEGQFAFHDSKKDIKKKTKKSTESLNEEVEKKKKKKKTISANETGSQ
73 >Gene.26::Ap48_1/1_1.000_347::g.26::m.26 Gene.26::Ap48_1/1_1.000_347::g.26 ORF type:internal len:116 (+) Ap48_1/1_1.000_347:1-345(+)
74 YWWLMPTMLYGLLWWRGSQAGYTFSEILCVYGYSLAIYIPISILWVIQISWLQWMLVMIG
75 MALSGTVLVLTFWPAVSQDDRKISMITMVMIVLFHGLLAIGFVLYFFHVPSHVPT
76 >Gene.27::Ap50_1/1_1.000_299::g.27::m.27 Gene.27::Ap50_1/1_1.000_299::g.27 ORF type:internal len:100 (+) Ap50_1/1_1.000_299:1-297(+)
77 EIVYRNYIDISVAVATPKGLVVPVLRDVGNMNYAEIEKGLNELGEKARTGNLAIEDMDGG
78 TFTISNGGVFGSLLGTPIINPPQSAILGMHGIFDRPVAI
79 >Gene.28::Ap51_1/1_1.000_363::g.28::m.28 Gene.28::Ap51_1/1_1.000_363::g.28 ORF type:internal len:122 (+) Ap51_1/1_1.000_363:1-363(+)
80 DKDKFKDLYRWTYKFGLDSEAGQRTLPVDMAISLWQLVFSERQPPILKQWLNFLNVHRNV
81 RGIPRDTWDMFLNFVEAVGDDLSSYDDTEAWPSLFDDFVEYENDRQNQNVKVDKVERDYY
82 D
83 >Gene.29::Ap59_1/1_1.000_402::g.29::m.29 Gene.29::Ap59_1/1_1.000_402::g.29 ORF type:internal len:135 (+) Ap59_1/1_1.000_402:1-402(+)
84 PRMINIQSTGWLLHRLHEGANINTAGVKDTPIALFCAGSSQHNLHRVLCLFSGCVCRTCS
85 DHICCVLLMNPEKELVGFGIQNSLALHLCRLTNASLCACVSMHMYFVCICITSVHMYLIY
86 KAFNLYMLNQQKQI
87 >Gene.30::Ap67_1/1_1.000_300::g.30::m.30 Gene.30::Ap67_1/1_1.000_300::g.30 ORF type:internal len:101 (+) Ap67_1/1_1.000_300:1-300(+)
88 RHWTVLGLRLQGDFFGLPRSGKMSEAVNPESTSSILPTITLSTDTDQAWPQLIWIPYVTL
89 TLILLLLTCLSFMHYHFKNRGKYLDAVYKQNNLTPCPKKY
90 >Gene.31::Ap68_1/1_1.000_323::g.31::m.31 Gene.31::Ap68_1/1_1.000_323::g.31 ORF type:internal len:108 (+) Ap68_1/1_1.000_323:1-321(+)
91 GRTRDHQQLLEASKCKPIQYPKPDGVVSFDLLSSVALTGTNHDHDQPPHLTLKDDEVPVA
92 RNLAIYDGPEERFCPAGVYEFIDTDQGKRLQINAQNCIHCKTCDIKC
93 >Gene.2::Ap6_1/1_1.000_390::g.2::m.2 Gene.2::Ap6_1/1_1.000_390::g.2 ORF type:internal len:131 (+) Ap6_1/1_1.000_390:1-390(+)
94 ENVLASHCPVGLSSTRYWQSEMADLPPGDAERGKKIFIQRCAHCHSVEAGGKHKQGPNLH
95 GFIGRKTGQAPGYTFTEANLKKGIIWDKETLDIYLENPKKYIPGTKMIFPGLKKKADRAD
96 LIAYLEESTK
97 >Gene.32::Ap75_1/1_1.000_532::g.32::m.32 Gene.32::Ap75_1/1_1.000_532::g.32 ORF type:internal len:178 (+) Ap75_1/1_1.000_532:1-531(+)
98 LEAAKKEITSQKERMSEMKGHLSAMAAITSGPEPDDVEVATSDEDFDDTHPELAAMKKSM
99 HQQEMRYSAALNQICDLQEQVKILQEKLAETQDKESEAQLREEVTKLRNKVMEYEETMKT
100 LEEDLKTMSQIAGESQGSLNTTQDELIKVTEDLAQLYHLICELNGETPNRVMLEHVQ
101 >Gene.33::Ap77_1/1_1.000_337::g.33::m.33 Gene.33::Ap77_1/1_1.000_337::g.33 ORF type:internal len:113 (+) Ap77_1/1_1.000_337:1-336(+)
102 CMAPPHSPMQYTWPFGHLYQCPLDRPIAVSICFLSSSLIPNPVRNTNRCSSFRASSTSFL
103 STSVSGVFLFNNCLAFSNFSSTTAFIFGFVSWILMSYSIVFARRRRRIFSIS
104 >Gene.35::Ap78_1/1_1.000_428::g.35::m.35 Gene.35::Ap78_1/1_1.000_428::g.35 ORF type:internal len:143 (+) Ap78_1/1_1.000_428:1-426(+)
105 VSRSEERRSTLGIITVKTIREPLRPYVIKRVLDPRTGEWISEQQASKEEILFVSRGIYHN
106 RKTGERMLIAEAIEKKLVEAEYLGDAPEPEVISNTYAVRSVVDLRLKKVITFGEAVRRGI
107 IDKESGTYRNTLTGETMYVGDA
108 >Gene.3::Ap7_1/1_1.000_421::g.3::m.3 Gene.3::Ap7_1/1_1.000_421::g.3 ORF type:internal len:141 (+) Ap7_1/1_1.000_421:1-420(+)
109 FVMNLFDWYSAGYSIIIVAFFEVIAISWIYGLQRFKKDIQMMVGKGRWINASFYYYWYPT
110 WFIISPALMLYILVTMSMQFAPITYGGSISYPSYADGIGFLMVGLALIYLPVLAMIEYCK
111 AHGFFSTMQKILRPKPDWGP
112 >Gene.36::Ap82_1/1_1.000_313::g.36::m.36 Gene.36::Ap82_1/1_1.000_313::g.36 ORF type:internal len:105 (+) Ap82_1/1_1.000_313:1-312(+)
113 SLLREPASVCASSSRELAETCLRLLLKLDTTYTTTDEAITDLLTVTVCQLRLADGRLSQP
114 TTTRPCSTDDVVYVPIPTEFFHSYSFEQLVAFYVQSAMTNQMPR
115 >Gene.37::Ap85_1/1_1.000_386::g.37::m.37 Gene.37::Ap85_1/1_1.000_386::g.37 ORF type:internal len:129 (+) Ap85_1/1_1.000_386:1-384(+)
116 SPAGRNVSWDRREAWYRDAERPRDYPPLPPPPPEVLRRSRSRSPIAPVAYSPRRSSPLRG
117 HSPYQRGRSSPPPLPRGRTPPRGRTPPPPRGRTPPPRGHTPLQRGRSPLPHGRSPPRARS
118 TPPLRATP
119 >Gene.38::Ap87_1/1_1.000_309::g.38::m.38 Gene.38::Ap87_1/1_1.000_309::g.38 ORF type:internal len:104 (+) Ap87_1/1_1.000_309:1-309(+)
120 EIPEILDMLPDYRGKRVLELGAGIGRFSGVLAKEAAHLTVVDFMESFVEKNKEINGHHTN
121 IEFIQADVSKLEVPQKSFDLIFSNWLLMYMSDEELKTFFVNCL
122 >Gene.39::Ap89_1/1_1.000_302::g.39::m.39 Gene.39::Ap89_1/1_1.000_302::g.39 ORF type:internal len:101 (+) Ap89_1/1_1.000_302:1-300(+)
123 VYHIKAEREEQGNRFIYHIKTEREDITDDSSDIYDPPPIYVPVKVNSTSHTSPSSSTKIS
124 IPFESPKGAKSPSAGTSWPKFTPDPERQPKLVLNPGKRRT
125 >Gene.5::Ap8_1/1_1.000_417::g.5::m.5 Gene.5::Ap8_1/1_1.000_417::g.5 ORF type:internal len:140 (+) Ap8_1/1_1.000_417:1-417(+)
126 AKTGFNTNNCYSTRFRNTFAYNQREWCSVLLCMTVLLLNMQRKRALPSSHLSINTAWYSG
127 QGEQEERLIVSTRACSPTHTHTSSHVCTRTRRPKHTNTHTGSRMFIRHSSSSSCHSTRTT
128 SRLSLGIIFLWANRGPIRQ
129 >Gene.40::Ap90_1/1_1.000_351::g.40::m.40 Gene.40::Ap90_1/1_1.000_351::g.40 ORF type:internal len:118 (+) Ap90_1/1_1.000_351:1-351(+)
130 DGALFGASGSSIRINGVDVVLASRLITRRVLPLSADLAVFASLFFYGMFSIFNHFVAVCF
131 HGNMALILSRRNAADCLSAFMTFNFFILYDSAAYLQYFFVLLFFYLLFFLFISQLIV
132 >Gene.6::Ap9_1/1_1.000_470::g.6::m.6 Gene.6::Ap9_1/1_1.000_470::g.6 ORF type:internal len:157 (+) Ap9_1/1_1.000_470:1-468(+)
133 LEEEIEELMHENDDEDGVEVEKSKDKHESVERAEKRGSNKNDVKHDEKDRSKDNKENELG
134 QIKEVEDMGPSVDRSENEREAVGKGIKSEQEGSGSKANKHQVSPTNQGCSHTTNESEKKE
135 PSHPRSQSQQDSDDDDGEGETLHEKSSSEGDDEGNQ