Mercurial > repos > iuc > orthofinder_onlygroups

annotate test-data/results/Statistics_Overall.csv @ 9:f03ba0ec3eed draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 254941ef6bb2127fbcf2315e72f1361cd812c4b7"
author iuc
date Sat, 27 Nov 2021 10:39:53 +0000
parents 1b0000af344e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
1 Number of genes 2733
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
2 Number of genes in orthogroups 1938
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
3 Number of unassigned genes 795
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
4 Percentage of genes in orthogroups 70.9
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
5 Percentage of unassigned genes 29.1
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
6 Number of orthogroups 536
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
7 Number of species-specific orthogroups 6
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
8 Number of genes in species-specific orthogroups 97
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
9 Percentage of genes in species-specific orthogroups 3.5
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
10 Mean orthogroup size 3.6
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
11 Median orthogroup size 4.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
12 G50 (assigned genes) 4
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
13 G50 (all genes) 4
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
14 O50 (assigned genes) 200
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
15 O50 (all genes) 299
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
16 Number of orthogroups with all species present 280
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
17 Number of single-copy orthogroups 254
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
18 Date 2017-06-06
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
19 Orthogroups file Orthogroups.csv
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
20 Unassigned genes file Orthogroups_UnassignedGenes.csv
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
21 Per-species statistics Statistics_PerSpecies.csv
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
22 Overall statistics Statistics_Overall.csv
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
23 Orthogroups shared between species Orthogroups_SpeciesOverlaps.csv
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
24
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
25 Average number of genes per-species in orthogroup Number of orthogroups Percentage of orthogroups Number of genes Percentage of genes
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
26 <1 222 41.4 510 26.3
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
27 '1 304 56.7 1270 65.5
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
28 '2 8 1.5 75 3.9
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
29 '3 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
30 '4 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
31 '5 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
32 '6 1 0.2 27 1.4
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
33 '7 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
34 '8 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
35 '9 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
36 '10 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
37 11-15 1 0.2 56 2.9
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
38 16-20 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
39 21-50 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
40 51-100 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
41 101-150 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
42 151-200 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
43 201-500 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
44 501-1000 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
45 '1001+ 0 0.0 0 0.0
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
46
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
47 Number of species in orthogroup Number of orthogroups
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
48 1 6
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
49 2 172
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
50 3 78
1b0000af344e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
iuc
parents:
diff changeset
51 4 280