Mercurial > repos > iuc > omark
annotate test-data/output.sum @ 1:facd37185a1d draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 1d8e2a062d5138c843e4980c94a6c91a37146416
| author | iuc |
|---|---|
| date | Tue, 03 Jun 2025 08:24:32 +0000 |
| parents | ff07b7d62944 |
| children |
| rev | line source |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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1 #The selected clade was Hominidae |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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2 #Number of conserved HOGs is: 17786 |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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3 #Results on conserved HOGs is: |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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4 #S:Single:S, D:Duplicated[U:Unexpected,E:Expected],M:Missing |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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5 S:39,D:0[U:0,E:0],M:17747 |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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6 S:0.22%,D:0.00%[U:0.00%,E:0.00%],M:99.78% |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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7 #On the whole proteome, there are 44 proteins |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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8 #Of which: |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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9 #A:Consistent (taxonomically)[P:Partial hits,F:Fragmented], I: Inconsistent (taxonomically)[P:Partial hits,F:Fragmented], C: Likely Contamination[P:Partial hits,F:Fragmented], U: Unknown |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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10 A:43[P:0,F:0],I:1[P:0,F:0],C:0[P:0,F:0],U:0 |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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11 A:97.73%[P:0.00%,F:0.00%],I:2.27%[P:0.00%,F:0.00%],C:0.00%[P:0.00%,F:0.00%],U:0.00% |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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12 #From HOG placement, the detected species are: |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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13 #Clade NCBI taxid Number of associated proteins Percentage of proteome's total |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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14 Homo sapiens 9606 44 100.00% |
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ff07b7d62944
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 547a79caaf320c241b148f73452036850880ce6f
iuc
parents:
diff
changeset
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15 |