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comparison build.xml @ 2:a0d72fc028e2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/odgi/ commit 7704c7c172c1c511dc23a3e5babdf3bf8e5198eb
author iuc
date Wed, 07 Sep 2022 16:58:30 +0000
parents 7eb7b43eb912
children
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1:7eb7b43eb912 2:a0d72fc028e2
1 <tool id="odgi_build" name="odgi build" version="@TOOL_VERSION@"> 1 <tool id="odgi_build" name="odgi build" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
2 <description>construct a dynamic succinct variation graph</description> 2 <description>construct a dynamic succinct variation graph</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 cp '$gfa' input.gfa &&
9
8 odgi build 10 odgi build
9 -g '$gfa' 11 -g input.gfa
10 -o '$odgi_output' 12 -o '$odgi_output'
11 $sort 13 $sort
12 #if $to_gfa: 14 #if $to_gfa:
13 --to-gfa > '$gfa_output' 15 --to-gfa > '$gfa_output'
14 #end if 16 #end if