diff obitab.xml @ 5:f4b2faaa9efb draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/obitools commit a01e3c562cf5d62af522b893a25abde6476a1f45
author iuc
date Thu, 30 Oct 2025 16:01:54 +0000
parents d5d44f7d6e4a
children
line wrap: on
line diff
--- a/obitab.xml	Wed Sep 01 07:50:49 2021 +0000
+++ b/obitab.xml	Thu Oct 30 16:01:54 2025 +0000
@@ -1,9 +1,9 @@
 <tool id="obi_tab" name="obitab" version="@TOOL_VERSION@" profile="@PROFILE@">
     <description>converts sequence file to a tabular file</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <command><![CDATA[
@@ -20,17 +20,17 @@
         input > '$output'
     ]]></command>
     <inputs>
-        <param name="input" type="data" format="@INPUT_FORMATS@,txt,tabular" label="Input sequences file" />
+        <param name="input" type="data" format="@INPUT_FORMATS@,txt,tabular" label="Input sequences file"/>
         <param name="output_seq_option" type="boolean" checked="false" truevalue="-o" falsevalue="" label="Do you want to add an extra column?" help="Use this option if you want to add an extra column at the end of the table for the sequence itself"/>
         <param name="no_definition_option" type="boolean" checked="false" truevalue="-d" falsevalue="" label="Do you want to remove column containing the sequence definition?" help="Use this option if you want to remove column containing the sequence definition in the output tab file"/>
-        <param name="additional_file" type="data" optional="true" format="tabular" label="filter attributes from tabular file" />
+        <param name="additional_file" type="data" optional="true" format="tabular" label="filter attributes from tabular file"/>
         <expand macro="input_format_options_macro"/>
     </inputs>
     <outputs>
         <data format="tabular" name="output"/>
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="1">
             <param name="input" value="output_obisort.fastq" />
             <param name="output_seq_option" value="False"/>
             <param name="no_definition_option" value="True"/>