Mercurial > repos > iuc > obi_tab
diff obitab.xml @ 5:f4b2faaa9efb draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/obitools commit a01e3c562cf5d62af522b893a25abde6476a1f45
| author | iuc |
|---|---|
| date | Thu, 30 Oct 2025 16:01:54 +0000 |
| parents | d5d44f7d6e4a |
| children |
line wrap: on
line diff
--- a/obitab.xml Wed Sep 01 07:50:49 2021 +0000 +++ b/obitab.xml Thu Oct 30 16:01:54 2025 +0000 @@ -1,9 +1,9 @@ <tool id="obi_tab" name="obitab" version="@TOOL_VERSION@" profile="@PROFILE@"> <description>converts sequence file to a tabular file</description> - <expand macro="bio_tools"/> <macros> <import>macros.xml</import> </macros> + <expand macro="bio_tools"/> <expand macro="requirements"/> <expand macro="stdio"/> <command><![CDATA[ @@ -20,17 +20,17 @@ input > '$output' ]]></command> <inputs> - <param name="input" type="data" format="@INPUT_FORMATS@,txt,tabular" label="Input sequences file" /> + <param name="input" type="data" format="@INPUT_FORMATS@,txt,tabular" label="Input sequences file"/> <param name="output_seq_option" type="boolean" checked="false" truevalue="-o" falsevalue="" label="Do you want to add an extra column?" help="Use this option if you want to add an extra column at the end of the table for the sequence itself"/> <param name="no_definition_option" type="boolean" checked="false" truevalue="-d" falsevalue="" label="Do you want to remove column containing the sequence definition?" help="Use this option if you want to remove column containing the sequence definition in the output tab file"/> - <param name="additional_file" type="data" optional="true" format="tabular" label="filter attributes from tabular file" /> + <param name="additional_file" type="data" optional="true" format="tabular" label="filter attributes from tabular file"/> <expand macro="input_format_options_macro"/> </inputs> <outputs> <data format="tabular" name="output"/> </outputs> <tests> - <test> + <test expect_num_outputs="1"> <param name="input" value="output_obisort.fastq" /> <param name="output_seq_option" value="False"/> <param name="no_definition_option" value="True"/>
