Mercurial > repos > iuc > obi_annotate

diff obiannotate.xml @ 5:e2332ae385c4 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/obitools commit a01e3c562cf5d62af522b893a25abde6476a1f45
author iuc
date Thu, 30 Oct 2025 16:04:12 +0000
parents d0f6ac976373
children
line wrap: on
line diff
--- a/obiannotate.xml	Wed Sep 01 07:49:38 2021 +0000
+++ b/obiannotate.xml	Thu Oct 30 16:04:12 2025 +0000
@@ -1,9 +1,9 @@
 <tool id="obi_annotate" name="obiannotate" version="@TOOL_VERSION@" profile="@PROFILE@">
     <description>Adds/Edits sequence record annotations</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <command><![CDATA[
@@ -129,29 +129,29 @@
         <data name="output" format="auto"/>
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="1">
             <param name="input" value="output_obiuniq.fasta" ftype="fasta"/>
             <section name="key_selector">
-                <param name="key" value="count" />
-                <param name="key2" value="merged_sample" />
+                <param name="key" value="count"/>
+                <param name="key2" value="merged_sample"/>
             </section>
-            <param name="uniqid" value="true" />
-            <param name="clearbool" value="true" />
-            <param name="length" value="true" />
-            <param name="seqrank" value="true" />
+            <param name="uniqid" value="true"/>
+            <param name="clearbool" value="true"/>
+            <param name="length" value="true"/>
+            <param name="seqrank" value="true"/>
 
             <output name="output" file="output_obiannotate.fasta" ftype="fasta"/>
         </test>
-        <test>
+        <test expect_num_outputs="1">
             <param name="input" value="output_obiuniq.fasta.gz" ftype="fasta.gz"/>
             <section name="key_selector">
-                <param name="key" value="count" />
-                <param name="key2" value="merged_sample" />
+                <param name="key" value="count"/>
+                <param name="key2" value="merged_sample"/>
             </section>
-            <param name="uniqid" value="true" />
-            <param name="clearbool" value="true" />
-            <param name="length" value="true" />
-            <param name="seqrank" value="true" />
+            <param name="uniqid" value="true"/>
+            <param name="clearbool" value="true"/>
+            <param name="length" value="true"/>
+            <param name="seqrank" value="true"/>
             <output name="output" file="output_obiannotate.fasta.gz" ftype="fasta.gz" decompress="true"/>
         </test>
         <!-- TODO fastq input test -->