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comparison obiannotate.xml @ 5:e2332ae385c4 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/obitools commit a01e3c562cf5d62af522b893a25abde6476a1f45
author iuc
date Thu, 30 Oct 2025 16:04:12 +0000
parents d0f6ac976373
children
comparison
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4:d0f6ac976373 5:e2332ae385c4
1 <tool id="obi_annotate" name="obiannotate" version="@TOOL_VERSION@" profile="@PROFILE@"> 1 <tool id="obi_annotate" name="obiannotate" version="@TOOL_VERSION@" profile="@PROFILE@">
2 <description>Adds/Edits sequence record annotations</description> 2 <description>Adds/Edits sequence record annotations</description>
3 <expand macro="bio_tools"/>
4 <macros> 3 <macros>
5 <import>macros.xml</import> 4 <import>macros.xml</import>
6 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <expand macro="stdio"/> 8 <expand macro="stdio"/>
9 <command><![CDATA[ 9 <command><![CDATA[
10 @GUNZIP_INPUT@ 10 @GUNZIP_INPUT@
11 11
127 </inputs> 127 </inputs>
128 <outputs> 128 <outputs>
129 <data name="output" format="auto"/> 129 <data name="output" format="auto"/>
130 </outputs> 130 </outputs>
131 <tests> 131 <tests>
132 <test> 132 <test expect_num_outputs="1">
133 <param name="input" value="output_obiuniq.fasta" ftype="fasta"/> 133 <param name="input" value="output_obiuniq.fasta" ftype="fasta"/>
134 <section name="key_selector"> 134 <section name="key_selector">
135 <param name="key" value="count" /> 135 <param name="key" value="count"/>
136 <param name="key2" value="merged_sample" /> 136 <param name="key2" value="merged_sample"/>
137 </section> 137 </section>
138 <param name="uniqid" value="true" /> 138 <param name="uniqid" value="true"/>
139 <param name="clearbool" value="true" /> 139 <param name="clearbool" value="true"/>
140 <param name="length" value="true" /> 140 <param name="length" value="true"/>
141 <param name="seqrank" value="true" /> 141 <param name="seqrank" value="true"/>
142 142
143 <output name="output" file="output_obiannotate.fasta" ftype="fasta"/> 143 <output name="output" file="output_obiannotate.fasta" ftype="fasta"/>
144 </test> 144 </test>
145 <test> 145 <test expect_num_outputs="1">
146 <param name="input" value="output_obiuniq.fasta.gz" ftype="fasta.gz"/> 146 <param name="input" value="output_obiuniq.fasta.gz" ftype="fasta.gz"/>
147 <section name="key_selector"> 147 <section name="key_selector">
148 <param name="key" value="count" /> 148 <param name="key" value="count"/>
149 <param name="key2" value="merged_sample" /> 149 <param name="key2" value="merged_sample"/>
150 </section> 150 </section>
151 <param name="uniqid" value="true" /> 151 <param name="uniqid" value="true"/>
152 <param name="clearbool" value="true" /> 152 <param name="clearbool" value="true"/>
153 <param name="length" value="true" /> 153 <param name="length" value="true"/>
154 <param name="seqrank" value="true" /> 154 <param name="seqrank" value="true"/>
155 <output name="output" file="output_obiannotate.fasta.gz" ftype="fasta.gz" decompress="true"/> 155 <output name="output" file="output_obiannotate.fasta.gz" ftype="fasta.gz" decompress="true"/>
156 </test> 156 </test>
157 <!-- TODO fastq input test --> 157 <!-- TODO fastq input test -->
158 </tests> 158 </tests>
159 159