Mercurial > repos > iuc > nextclade

diff macros.xml @ 16:ae29ea21e448 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
author iuc
date Thu, 04 Aug 2022 06:56:46 +0000
parents 309c0899cd39
children 6f40b91cd1ac
line wrap: on
line diff
--- a/macros.xml	Mon Mar 21 22:08:44 2022 +0000
+++ b/macros.xml	Thu Aug 04 06:56:46 2022 +0000
@@ -1,6 +1,6 @@
 <macros>
     <!-- same version number is used for nextclade and nextalign releases, even though they are distinct tools -->
-    <token name="@TOOL_VERSION@">1.11.0</token>
+    <token name="@TOOL_VERSION@">2.4.0</token>
     <xml name="citations">
         <citations>
             <citation type="bibtex">@online{nextclade,
@@ -25,6 +25,14 @@
     #end if
 ]]></token>
 
+    <token name="@QUERY_FASTA@"><![CDATA[
+    #if $input_fasta.is_of_type('fasta.gz')
+        #set $query = 'query.fa.gz'
+    #else
+        #set $query = 'query.fa'
+    #end if
+    ln -s '$input_fasta' $query &&    
+]]></token>
     <!--
         inputs
     -->