Mercurial > repos > iuc > nextclade

comparison nextclade.xml @ 15:309c0899cd39 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 8946fa636bdd03168eb786d052b8f18c9cae2693"
author iuc
date Mon, 21 Mar 2022 22:08:44 +0000
parents 356032a708dc
children ae29ea21e448
comparison
equal deleted inserted replaced
14:691fe57397af 15:309c0899cd39
114 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> 114 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" />
115 <param name="outputs" value="report_tsv" /> 115 <param name="outputs" value="report_tsv" />
116 <param name="organism" value="sars-cov-2" /> 116 <param name="organism" value="sars-cov-2" />
117 <output name="report_tsv"> 117 <output name="report_tsv">
118 <assert_contents> 118 <assert_contents>
119 <has_n_columns n="62" /> 119 <has_n_columns n="63" />
120 <has_text text="20A" /> 120 <has_text text="20A" />
121 </assert_contents> 121 </assert_contents>
122 </output> 122 </output>
123 </test> 123 </test>
124 <test expect_num_outputs="3"> 124 <test expect_num_outputs="3">
125 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> 125 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" />
126 <param name="outputs" value="report_tsv,report_json,output_tree" /> 126 <param name="outputs" value="report_tsv,report_json,output_tree" />
127 <param name="organism" value="sars-cov-2" /> 127 <param name="organism" value="sars-cov-2" />
128 <output name="report_tsv"> 128 <output name="report_tsv">
129 <assert_contents> 129 <assert_contents>
130 <has_n_columns n="62" /> 130 <has_n_columns n="63" />
131 <has_text text="20A" /> 131 <has_text text="20A" />
132 </assert_contents> 132 </assert_contents>
133 </output> 133 </output>
134 <output name="report_json"> 134 <output name="report_json">
135 <assert_contents> 135 <assert_contents>
150 <param name="advanced_options" value="yes" /> 150 <param name="advanced_options" value="yes" />
151 <param name="input_qc_config" value="strict_qc.json" ftype="json" /> 151 <param name="input_qc_config" value="strict_qc.json" ftype="json" />
152 </conditional> 152 </conditional>
153 <output name="report_tsv"> 153 <output name="report_tsv">
154 <assert_contents> 154 <assert_contents>
155 <has_n_columns n="62" /> 155 <has_n_columns n="63" />
156 <has_text text="mediocre" /> 156 <has_text text="mediocre" />
157 </assert_contents> 157 </assert_contents>
158 </output> 158 </output>
159 </test> 159 </test>
160 <test expect_num_outputs="2"> 160 <test expect_num_outputs="2">
165 <param name="advanced_options" value="yes" /> 165 <param name="advanced_options" value="yes" />
166 <param name="include_reference" value="true" /> 166 <param name="include_reference" value="true" />
167 </conditional> 167 </conditional>
168 <output name="report_tsv"> 168 <output name="report_tsv">
169 <assert_contents> 169 <assert_contents>
170 <has_n_columns n="62" /> 170 <has_n_columns n="63" />
171 <has_text text="mediocre" /> 171 <has_text text="mediocre" />
172 </assert_contents> 172 </assert_contents>
173 </output> 173 </output>
174 <output name="output_fasta" value="output_alignment.fasta" ftype="fasta" /> 174 <output name="output_fasta" value="output_alignment.fasta" ftype="fasta" />
175 </test> 175 </test>