Mercurial > repos > iuc > nextclade

comparison test-data/strict_qc.json @ 6:0c630ab4ff32 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
author iuc
date Fri, 01 Oct 2021 07:45:54 +0000
parents 919cc9dc23f0
children
comparison
equal deleted inserted replaced
5:fc0f242f08f6 6:0c630ab4ff32
1 { 1 {
2 "schemaVersion": "1.2.0",
2 "privateMutations": { 3 "privateMutations": {
3 "enabled": true, 4 "enabled": true,
4 "typical": 5, 5 "typical": 5,
5 "cutoff": 10 6 "cutoff": 10
6 }, 7 },
16 "scoreWeight": 20 17 "scoreWeight": 20
17 }, 18 },
18 "mixedSites": { 19 "mixedSites": {
19 "enabled": true, 20 "enabled": true,
20 "mixedSitesThreshold": 5 21 "mixedSitesThreshold": 5
22 },
23 "frameShifts": {
24 "enabled": true,
25 "ignoredFrameShifts": [
26 { "geneName": "ORF3a", "codonRange": {"begin": 256, "end": 276} },
27 { "geneName": "ORF3a", "codonRange": {"begin": 258, "end": 276} },
28 { "geneName": "ORF7a", "codonRange": {"begin": 61, "end": 122} },
29 { "geneName": "ORF7a", "codonRange": {"begin": 62, "end": 122} },
30 { "geneName": "ORF7a", "codonRange": {"begin": 76, "end": 122} },
31 { "geneName": "ORF7a", "codonRange": {"begin": 101, "end": 122} },
32 { "geneName": "ORF7b", "codonRange": {"begin": 41, "end": 44} },
33 { "geneName": "ORF8", "codonRange": {"begin": 107, "end": 122} },
34 { "geneName": "ORF8", "codonRange": {"begin": 119, "end": 122} },
35 { "geneName": "ORF8", "codonRange": {"begin": 120, "end": 122} },
36 { "geneName": "ORF8", "codonRange": {"begin": 121, "end": 123} }
37 ]
38 },
39 "stopCodons": {
40 "enabled": true,
41 "ignoredStopCodons": [
42 {"geneName": "ORF7a", "codon": 61},
43 {"geneName": "ORF7a", "codon": 93},
44 {"geneName": "ORF7b", "codon": 32},
45 {"geneName": "ORF7b", "codon": 38},
46 {"geneName": "ORF8", "codon": 17},
47 {"geneName": "ORF8", "codon": 18},
48 {"geneName": "ORF8", "codon": 25},
49 {"geneName": "ORF8", "codon": 26},
50 {"geneName": "ORF8", "codon": 58},
51 {"geneName": "ORF8", "codon": 66},
52 {"geneName": "ORF8", "codon": 67},
53 {"geneName": "ORF8", "codon": 105}
54 ]
21 } 55 }
22 } 56 }