Mercurial > repos > iuc > nextalign
diff test-data/strict_qc.json @ 4:0f428160561c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
| author | iuc |
|---|---|
| date | Fri, 01 Oct 2021 07:45:17 +0000 |
| parents | cb5b94331657 |
| children |
line wrap: on
line diff
--- a/test-data/strict_qc.json Sat Sep 25 18:16:38 2021 +0000 +++ b/test-data/strict_qc.json Fri Oct 01 07:45:17 2021 +0000 @@ -1,4 +1,5 @@ { + "schemaVersion": "1.2.0", "privateMutations": { "enabled": true, "typical": 5, @@ -18,5 +19,38 @@ "mixedSites": { "enabled": true, "mixedSitesThreshold": 5 + }, + "frameShifts": { + "enabled": true, + "ignoredFrameShifts": [ + { "geneName": "ORF3a", "codonRange": {"begin": 256, "end": 276} }, + { "geneName": "ORF3a", "codonRange": {"begin": 258, "end": 276} }, + { "geneName": "ORF7a", "codonRange": {"begin": 61, "end": 122} }, + { "geneName": "ORF7a", "codonRange": {"begin": 62, "end": 122} }, + { "geneName": "ORF7a", "codonRange": {"begin": 76, "end": 122} }, + { "geneName": "ORF7a", "codonRange": {"begin": 101, "end": 122} }, + { "geneName": "ORF7b", "codonRange": {"begin": 41, "end": 44} }, + { "geneName": "ORF8", "codonRange": {"begin": 107, "end": 122} }, + { "geneName": "ORF8", "codonRange": {"begin": 119, "end": 122} }, + { "geneName": "ORF8", "codonRange": {"begin": 120, "end": 122} }, + { "geneName": "ORF8", "codonRange": {"begin": 121, "end": 123} } + ] + }, + "stopCodons": { + "enabled": true, + "ignoredStopCodons": [ + {"geneName": "ORF7a", "codon": 61}, + {"geneName": "ORF7a", "codon": 93}, + {"geneName": "ORF7b", "codon": 32}, + {"geneName": "ORF7b", "codon": 38}, + {"geneName": "ORF8", "codon": 17}, + {"geneName": "ORF8", "codon": 18}, + {"geneName": "ORF8", "codon": 25}, + {"geneName": "ORF8", "codon": 26}, + {"geneName": "ORF8", "codon": 58}, + {"geneName": "ORF8", "codon": 66}, + {"geneName": "ORF8", "codon": 67}, + {"geneName": "ORF8", "codon": 105} + ] } }