Mercurial > repos > iuc > nextalign

annotate test-data/genemap.gff3 @ 15:5f0d8f9f311a draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c41319b6593caa0a11835f5e8bc48b1f1e316ff8
author iuc
date Sat, 08 Oct 2022 20:01:16 +0000
parents 8251e0ff00f8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
14
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
1 # Gene map (genome annotation) of SARS-CoV-2 in GFF format.
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
2 # For gene map purpses we only need some of the columns. We substitute unused values with "." as per GFF spec.
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
3 # See GFF format reference at https://www.ensembl.org/info/website/upload/gff.html
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
4 # seqname source feature start end score strand frame attribute
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
5 . . gene 26245 26472 . + . gene_name=E
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
6 . . gene 26523 27191 . + . gene_name=M
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
7 . . gene 28274 29533 . + . gene_name=N
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
8 . . gene 266 13468 . + . gene_name=ORF1a
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
9 . . gene 13468 21555 . + . gene_name=ORF1b
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
10 . . gene 25393 26220 . + . gene_name=ORF3a
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
11 . . gene 27202 27387 . + . gene_name=ORF6
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
12 . . gene 27394 27759 . + . gene_name=ORF7a
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
13 . . gene 27756 27887 . + . gene_name=ORF7b
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
14 . . gene 27894 28259 . + . gene_name=ORF8
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
15 . . gene 28284 28577 . + . gene_name=ORF9b
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
16 . . gene 29558 29674 . + . gene_name=ORF10
8251e0ff00f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
17 . . gene 21563 25384 . + . gene_name=S