Mercurial > repos > iuc > ncbi_eutils_einfo

diff einfo.xml @ 0:6a27397a8d55 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 780c9984a9c44d046aadf1e316a668d1e53aa1f0
author iuc
date Sat, 31 Oct 2015 12:44:29 -0400
parents
children 7046e3b3498b
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/einfo.xml	Sat Oct 31 12:44:29 2015 -0400
@@ -0,0 +1,40 @@
+<?xml version="1.0"?>
+<tool id="ncbi_eutils_einfo" name="NCBI EInfo" version="@WRAPPER_VERSION@">
+  <description>fetch NCBI database metadata</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <expand macro="stdio"/>
+  <version_command>python einfo.py --version</version_command>
+  <command interpreter="python"><![CDATA[einfo.py
+--db $db_select
+
+@EMAIL_ARGUMENTS@
+> $default]]></command>
+  <inputs>
+    <expand macro="dbselect"/>
+  </inputs>
+  <outputs>
+    <data format="xml" name="default" label="NCBI Database Information: $db_select"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="db_select" value="pubmed"/>
+      <output name="default" file="pubmed.metadata.xml" compare="sim_size"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+NCBI Entrez EInfo
+=================
+
+Provides the number of records indexed in each field of a given database, the
+date of the last update of the database, and the available links from the
+database to other Entrez databases.
+
+@REFERENCES@
+
+@DISCLAIMER@
+      ]]></help>
+  <expand macro="citations"/>
+</tool>