Mercurial > repos > iuc > ncbi_eutils_egquery

diff elink.py @ 3:3ebc86b520d7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 041f11d6eb83568deda382857b121274dffe9825
author iuc
date Fri, 10 Jun 2016 14:48:52 -0400
parents 22fed2340d2b
children 2d54a753d1f1
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line diff
--- a/elink.py	Thu Apr 07 17:36:58 2016 -0400
+++ b/elink.py	Fri Jun 10 14:48:52 2016 -0400
@@ -1,7 +1,8 @@
 #!/usr/bin/env python
 import argparse
+import json
+
 import eutils
-import json
 
 
 if __name__ == '__main__':
@@ -9,8 +10,8 @@
     parser.add_argument('db', help='Database to use, sometimes "none" (e.g. *check)')
     parser.add_argument('dbfrom', help='Database containing input UIDs')
     parser.add_argument('cmd', choices=['neighbor', 'neighbor_score',
-                        'neighbor_history', 'acheck', 'ncheck', 'lcheck',
-                        'llinks', 'llinkslib', 'prlinks'],
+                                        'neighbor_history', 'acheck', 'ncheck', 'lcheck',
+                                        'llinks', 'llinkslib', 'prlinks'],
                         help='ELink command mode')
     # Only used in case of neighbor_history
     parser.add_argument('--history_out', type=argparse.FileType('w'),