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comparison macros.xml @ 3:3ebc86b520d7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 041f11d6eb83568deda382857b121274dffe9825
author iuc
date Fri, 10 Jun 2016 14:48:52 -0400
parents de108f838cb0
children 20a86bfb54eb
comparison
equal deleted inserted replaced
2:de108f838cb0 3:3ebc86b520d7
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@WRAPPER_VERSION@">1.0</token> 3 <token name="@WRAPPER_VERSION@">1.1</token>
4 <token name="@EMAIL_ARGUMENTS@"> 4 <token name="@EMAIL_ARGUMENTS@">
5 --user_email "$__user_email__" 5 --user_email "$__user_email__"
6 #set admin_emails = ';'.join(str($__admin_users__).split(',')) 6 #set admin_emails = ';'.join(str($__admin_users__).split(','))
7 --admin_email "$admin_emails" 7 --admin_email "$admin_emails"
8 </token> 8 </token>
88 <xml name="dbselect" 88 <xml name="dbselect"
89 token_name="db_select" 89 token_name="db_select"
90 token_label="NCBI Database to Use" 90 token_label="NCBI Database to Use"
91 > 91 >
92 <param name="@NAME@" type="select" label="@LABEL@"> 92 <param name="@NAME@" type="select" label="@LABEL@">
93 <option value="annotinfo">Annotation Information</option>
93 <option value="assembly">Assembly</option> 94 <option value="assembly">Assembly</option>
94 <option value="bioproject">BioProject</option> 95 <option value="bioproject">BioProject</option>
95 <option value="biosample">BioSample</option> 96 <option value="biosample">BioSample</option>
96 <option value="biosystems">Biosystems</option> 97 <option value="biosystems">Biosystems</option>
97 <option value="blastdbinfo">Blast Database Information</option> 98 <option value="blastdbinfo">Blast Database Information</option>
98 <option value="books">Books</option> 99 <option value="books">Books</option>
99 <option value="cdd">Conserved Domains</option> 100 <option value="cdd">Conserved Domains</option>
100 <option value="clinvar">Clinical Variants</option> 101 <option value="clinvar">Clinical Variants</option>
101 <option value="clone">CLone</option> 102 <option value="clone">CLone</option>
102 <option value="dbvar">dbVar</option> 103 <option value="dbvar">dbVar</option>
103 <option value="epigenomics">Epigenomics</option>
104 <option value="gap">dbGaP</option> 104 <option value="gap">dbGaP</option>
105 <option value="gapplus">gapplus</option>
105 <option value="gds">GEO Datasets</option> 106 <option value="gds">GEO Datasets</option>
107 <option value="gencoll">Gencoll</option>
106 <option value="gene">Gene</option> 108 <option value="gene">Gene</option>
107 <option value="genome">Genome</option> 109 <option value="genome">Genome</option>
108 <option value="geoprofiles">GEO Profiles</option> 110 <option value="geoprofiles">GEO Profiles</option>
111 <option value="grasp">grasp</option>
109 <option value="gtr">Genetic Testing Registry</option> 112 <option value="gtr">Genetic Testing Registry</option>
110 <option value="homologene">HomoloGene</option> 113 <option value="homologene">HomoloGene</option>
111 <option value="journals">Journals</option>
112 <option value="medgen">MedGen</option> 114 <option value="medgen">MedGen</option>
113 <option value="mesh">MeSH</option> 115 <option value="mesh">MeSH</option>
114 <option value="ncbisearch">NCBI Web Site</option> 116 <option value="ncbisearch">NCBI Web Site</option>
115 <option value="nlmcatalog">NLM Catalog</option> 117 <option value="nlmcatalog">NLM Catalog</option>
116 <option value="nuccore">Nucleotide</option> 118 <option value="nuccore">Nuccore</option>
117 <option value="nucest">EST</option> 119 <option value="nucest">EST</option>
118 <option value="nucgss">GSS</option> 120 <option value="nucgss">GSS</option>
121 <option value="nucleotide">Nucleotide</option>
119 <option value="omim">OMIM</option> 122 <option value="omim">OMIM</option>
123 <option value="orgtrack">Orgtrack</option>
120 <option value="pcassay">PubChem BioAssay</option> 124 <option value="pcassay">PubChem BioAssay</option>
121 <option value="pccompound">PubChem Compound</option> 125 <option value="pccompound">PubChem Compound</option>
122 <option value="pcsubstance">PubChem Substance</option> 126 <option value="pcsubstance">PubChem Substance</option>
123 <option value="pmc">PubMed Central</option> 127 <option value="pmc">PubMed Central</option>
124 <option value="popset">PopSet</option> 128 <option value="popset">PopSet</option>
125 <option value="probe">Probe</option> 129 <option value="probe">Probe</option>
126 <option value="protein">Protein</option> 130 <option value="protein">Protein</option>
127 <option value="proteinclusters">Protein Clusters</option> 131 <option value="proteinclusters">Protein Clusters</option>
128 <option value="pubmed">PubMed</option> 132 <option value="pubmed">PubMed</option>
129 <option value="pubmedhealth">PubMed Health</option> 133 <option value="pubmedhealth">PubMed Health</option>
134 <option value="seqannot">seqannot</option>
130 <option value="snp">SNP</option> 135 <option value="snp">SNP</option>
131 <option value="sra">SRA</option> 136 <option value="sra">SRA</option>
132 <option value="structure">Structure</option> 137 <option value="structure">Structure</option>
133 <option value="taxonomy">Taxonomy</option> 138 <option value="taxonomy">Taxonomy</option>
134 <option value="toolkit">NCBI C++ Toolkit</option>
135 <option value="toolkitall">NCBI C++ Toolkit All</option>
136 <option value="toolkitbook">NCBI C++ Toolkit Book</option>
137 <option value="unigene">UniGene</option> 139 <option value="unigene">UniGene</option>
138 </param> 140 </param>
139 </xml> 141 </xml>
140 <xml name="db"> 142 <xml name="db">
141 <conditional name="db"> 143 <conditional name="db">
142 <expand macro="dbselect" /> 144 <expand macro="dbselect" />
145 <when value="annotinfo">
146 <param name="output_format" type="select" label="Output Format">
147 <option value="docsum-json">Document Summary (json)</option>
148 <option value="docsum-xml">Document Summary (xml)</option>
149 <option value="full-text">Full Document (text)</option>
150 <option value="full-xml">Full Document (xml)</option>
151 <option value="uilist-text">Unique Identifier List (text)</option>
152 <option value="uilist-xml">Unique Identifier List (xml)</option>
153 </param>
154 </when>
143 <when value="assembly"> 155 <when value="assembly">
144 <param name="output_format" type="select" label="Output Format"> 156 <param name="output_format" type="select" label="Output Format">
145 <option value="docsum-xml">Document summary</option> 157 <option value="docsum-json">Document Summary (json)</option>
146 <option value="uilist-xml">List of UIDs (XML)</option> 158 <option value="docsum-xml">Document Summary (xml)</option>
147 <option value="uilist-text">List of UIDs (plain text)</option> 159 <option value="full-text">Full Document (text)</option>
160 <option value="full-xml">Full Document (xml)</option>
161 <option value="uilist-text">Unique Identifier List (text)</option>
162 <option value="uilist-xml">Unique Identifier List (xml)</option>
148 </param> 163 </param>
149 </when> 164 </when>
150 <when value="bioproject"> 165 <when value="bioproject">
151 <param name="output_format" type="select" label="Output Format"> 166 <param name="output_format" type="select" label="Output Format">
152 <option value="docsum-xml">Document summary</option> 167 <option value="docsum-json">Document Summary (json)</option>
153 <option value="uilist-xml">List of UIDs (XML)</option> 168 <option value="docsum-xml">Document Summary (xml)</option>
154 <option value="uilist-text">List of UIDs (plain text)</option> 169 <option value="full-text">Full Document (text)</option>
155 <option value="xml-xml">Full record</option> 170 <option value="full-xml">Full Document (xml)</option>
171 <option value="native-None">BioProject Report</option>
172 <option value="native-xml">RecordSet (xml)</option>
173 <option value="uilist-text">Unique Identifier List (text)</option>
174 <option value="uilist-xml">Unique Identifier List (xml)</option>
156 </param> 175 </param>
157 </when> 176 </when>
158 <when value="biosample"> 177 <when value="biosample">
159 <param name="output_format" type="select" label="Output Format"> 178 <param name="output_format" type="select" label="Output Format">
160 <option value="docsum-xml">Document summary</option> 179 <option value="docsum-json">Document Summary (json)</option>
161 <option value="uilist-xml">List of UIDs (XML)</option> 180 <option value="docsum-xml">Document Summary (xml)</option>
162 <option value="uilist-text">List of UIDs (plain text)</option> 181 <option value="full-text">Full Document (text)</option>
163 <option value="full-xml">Full record (XML)</option> 182 <option value="full-xml">Full Document (xml)</option>
164 <option value="full-text">Full record (plain text)</option> 183 <option value="native-None">BioSample Report</option>
184 <option value="native-xml">BioSampleSet (xml)</option>
185 <option value="uilist-text">Unique Identifier List (text)</option>
186 <option value="uilist-xml">Unique Identifier List (xml)</option>
165 </param> 187 </param>
166 </when> 188 </when>
167 <when value="biosystems"> 189 <when value="biosystems">
168 <param name="output_format" type="select" label="Output Format"> 190 <param name="output_format" type="select" label="Output Format">
169 <option value="docsum-xml">Document summary</option> 191 <option value="docsum-json">Document Summary (json)</option>
170 <option value="uilist-xml">List of UIDs (XML)</option> 192 <option value="docsum-xml">Document Summary (xml)</option>
171 <option value="uilist-text">List of UIDs (plain text)</option> 193 <option value="full-text">Full Document (text)</option>
172 <option value="xml-xml">Full record</option> 194 <option value="full-xml">Full Document (xml)</option>
195 <option value="native-xml">Sys-set (xml)</option>
196 <option value="uilist-text">Unique Identifier List (text)</option>
197 <option value="uilist-xml">Unique Identifier List (xml)</option>
173 </param> 198 </param>
174 </when> 199 </when>
175 <when value="blastdbinfo"> 200 <when value="blastdbinfo">
176 <param name="output_format" type="select" label="Output Format"> 201 <param name="output_format" type="select" label="Output Format">
177 <option value="docsum-xml">Document summary</option> 202 <option value="docsum-json">Document Summary (json)</option>
178 <option value="uilist-xml">List of UIDs (XML)</option> 203 <option value="docsum-xml">Document Summary (xml)</option>
179 <option value="uilist-text">List of UIDs (plain text)</option> 204 <option value="full-text">Full Document (text)</option>
205 <option value="full-xml">Full Document (xml)</option>
206 <option value="uilist-text">Unique Identifier List (text)</option>
207 <option value="uilist-xml">Unique Identifier List (xml)</option>
180 </param> 208 </param>
181 </when> 209 </when>
182 <when value="books"> 210 <when value="books">
183 <param name="output_format" type="select" label="Output Format"> 211 <param name="output_format" type="select" label="Output Format">
184 <option value="docsum-xml">Document summary</option> 212 <option value="docsum-json">Document Summary (json)</option>
185 <option value="uilist-xml">List of UIDs (XML)</option> 213 <option value="docsum-xml">Document Summary (xml)</option>
186 <option value="uilist-text">List of UIDs (plain text)</option> 214 <option value="full-text">Full Document (text)</option>
215 <option value="full-xml">Full Document (xml)</option>
216 <option value="uilist-text">Unique Identifier List (text)</option>
217 <option value="uilist-xml">Unique Identifier List (xml)</option>
187 </param> 218 </param>
188 </when> 219 </when>
189 <when value="cdd"> 220 <when value="cdd">
190 <param name="output_format" type="select" label="Output Format"> 221 <param name="output_format" type="select" label="Output Format">
191 <option value="docsum-xml">Document summary</option> 222 <option value="docsum-json">Document Summary (json)</option>
192 <option value="uilist-xml">List of UIDs (XML)</option> 223 <option value="docsum-xml">Document Summary (xml)</option>
193 <option value="uilist-text">List of UIDs (plain text)</option> 224 <option value="full-text">Full Document (text)</option>
225 <option value="full-xml">Full Document (xml)</option>
226 <option value="uilist-text">Unique Identifier List (text)</option>
227 <option value="uilist-xml">Unique Identifier List (xml)</option>
194 </param> 228 </param>
195 </when> 229 </when>
196 <when value="clinvar"> 230 <when value="clinvar">
197 <param name="output_format" type="select" label="Output Format"> 231 <param name="output_format" type="select" label="Output Format">
198 <option value="docsum-xml">Document summary</option> 232 <option value="docsum-json">Document Summary (json)</option>
199 <option value="uilist-xml">List of UIDs (XML)</option> 233 <option value="docsum-xml">Document Summary (xml)</option>
200 <option value="uilist-text">List of UIDs (plain text)</option> 234 <option value="full-text">Full Document (text)</option>
235 <option value="full-xml">Full Document (xml)</option>
236 <option value="uilist-text">Unique Identifier List (text)</option>
237 <option value="uilist-xml">Unique Identifier List (xml)</option>
201 </param> 238 </param>
202 </when> 239 </when>
203 <when value="clone"> 240 <when value="clone">
204 <param name="output_format" type="select" label="Output Format"> 241 <param name="output_format" type="select" label="Output Format">
205 <option value="docsum-xml">Document summary</option> 242 <option value="docsum-json">Document Summary (json)</option>
206 <option value="uilist-xml">List of UIDs (XML)</option> 243 <option value="docsum-xml">Document Summary (xml)</option>
207 <option value="uilist-text">List of UIDs (plain text)</option> 244 <option value="full-text">Full Document (text)</option>
245 <option value="full-xml">Full Document (xml)</option>
246 <option value="uilist-text">Unique Identifier List (text)</option>
247 <option value="uilist-xml">Unique Identifier List (xml)</option>
208 </param> 248 </param>
209 </when> 249 </when>
210 <when value="dbvar"> 250 <when value="dbvar">
211 <param name="output_format" type="select" label="Output Format"> 251 <param name="output_format" type="select" label="Output Format">
212 <option value="docsum-xml">Document summary</option> 252 <option value="docsum-json">Document Summary (json)</option>
213 <option value="uilist-xml">List of UIDs (XML)</option> 253 <option value="docsum-xml">Document Summary (xml)</option>
214 <option value="uilist-text">List of UIDs (plain text)</option> 254 <option value="full-text">Full Document (text)</option>
215 </param> 255 <option value="full-xml">Full Document (xml)</option>
216 </when> 256 <option value="uilist-text">Unique Identifier List (text)</option>
217 <when value="epigenomics"> 257 <option value="uilist-xml">Unique Identifier List (xml)</option>
218 <param name="output_format" type="select" label="Output Format">
219 <option value="docsum-xml">Document summary</option>
220 <option value="uilist-xml">List of UIDs (XML)</option>
221 <option value="uilist-text">List of UIDs (plain text)</option>
222 </param> 258 </param>
223 </when> 259 </when>
224 <when value="gap"> 260 <when value="gap">
225 <param name="output_format" type="select" label="Output Format"> 261 <param name="output_format" type="select" label="Output Format">
226 <option value="docsum-xml">Document summary</option> 262 <option value="docsum-json">Document Summary (json)</option>
227 <option value="uilist-xml">List of UIDs (XML)</option> 263 <option value="docsum-xml">Document Summary (xml)</option>
228 <option value="uilist-text">List of UIDs (plain text)</option> 264 <option value="full-text">Full Document (text)</option>
265 <option value="full-xml">Full Document (xml)</option>
266 <option value="uilist-text">Unique Identifier List (text)</option>
267 <option value="uilist-xml">Unique Identifier List (xml)</option>
268 </param>
269 </when>
270 <when value="gapplus">
271 <param name="output_format" type="select" label="Output Format">
272 <option value="docsum-json">Document Summary (json)</option>
273 <option value="docsum-xml">Document Summary (xml)</option>
274 <option value="full-text">Full Document (text)</option>
275 <option value="full-xml">Full Document (xml)</option>
276 <option value="uilist-text">Unique Identifier List (text)</option>
277 <option value="uilist-xml">Unique Identifier List (xml)</option>
229 </param> 278 </param>
230 </when> 279 </when>
231 <when value="gds"> 280 <when value="gds">
232 <param name="output_format" type="select" label="Output Format"> 281 <param name="output_format" type="select" label="Output Format">
233 <option value="docsum-xml">Document summary</option> 282 <option value="docsum-json">Document Summary (json)</option>
234 <option value="uilist-xml">List of UIDs (XML)</option> 283 <option value="docsum-xml">Document Summary (xml)</option>
235 <option value="uilist-text">List of UIDs (plain text)</option> 284 <option value="full-text">Full Document (text)</option>
236 <option value="summary-text">Summary</option> 285 <option value="full-xml">Full Document (xml)</option>
286 <option value="native-xml">RecordSet (xml)</option>
287 <option value="summary-text">Summary (text)</option>
288 <option value="uilist-text">Unique Identifier List (text)</option>
289 <option value="uilist-xml">Unique Identifier List (xml)</option>
290 </param>
291 </when>
292 <when value="gencoll">
293 <param name="output_format" type="select" label="Output Format">
294 <option value="docsum-json">Document Summary (json)</option>
295 <option value="docsum-xml">Document Summary (xml)</option>
296 <option value="full-text">Full Document (text)</option>
297 <option value="full-xml">Full Document (xml)</option>
298 <option value="uilist-text">Unique Identifier List (text)</option>
299 <option value="uilist-xml">Unique Identifier List (xml)</option>
237 </param> 300 </param>
238 </when> 301 </when>
239 <when value="gene"> 302 <when value="gene">
240 <param name="output_format" type="select" label="Output Format"> 303 <param name="output_format" type="select" label="Output Format">
241 <option value="docsum-xml">Document summary</option> 304 <option value="docsum-json">Document Summary (json)</option>
242 <option value="uilist-xml">List of UIDs (XML)</option> 305 <option value="docsum-xml">Document Summary (xml)</option>
243 <option value="uilist-text">List of UIDs (plain text)</option> 306 <option value="full-text">Full Document (text)</option>
244 <option value="null-asn.1">text (ASN.1)</option> 307 <option value="full-xml">Full Document (xml)</option>
245 <option value="null-xml">XML</option> 308 <option value="gene_table-xml">Gene Table (xml)</option>
246 <option value="gene_table-text">Gene table</option> 309 <option value="native-asn.1">Entrezgene (asn.1)</option>
310 <option value="native-text">Gene Report (text)</option>
311 <option value="native-xml">Entrezgene-Set (xml)</option>
312 <option value="tabular-tabular">Tabular Report (tabular)</option>
313 <option value="uilist-text">Unique Identifier List (text)</option>
314 <option value="uilist-xml">Unique Identifier List (xml)</option>
247 </param> 315 </param>
248 </when> 316 </when>
249 <when value="genome"> 317 <when value="genome">
250 <param name="output_format" type="select" label="Output Format"> 318 <param name="output_format" type="select" label="Output Format">
251 <option value="docsum-xml">Document summary</option> 319 <option value="docsum-json">Document Summary (json)</option>
252 <option value="uilist-xml">List of UIDs (XML)</option> 320 <option value="docsum-xml">Document Summary (xml)</option>
253 <option value="uilist-text">List of UIDs (plain text)</option> 321 <option value="full-text">Full Document (text)</option>
322 <option value="full-xml">Full Document (xml)</option>
323 <option value="uilist-text">Unique Identifier List (text)</option>
324 <option value="uilist-xml">Unique Identifier List (xml)</option>
254 </param> 325 </param>
255 </when> 326 </when>
256 <when value="geoprofiles"> 327 <when value="geoprofiles">
257 <param name="output_format" type="select" label="Output Format"> 328 <param name="output_format" type="select" label="Output Format">
258 <option value="docsum-xml">Document summary</option> 329 <option value="docsum-json">Document Summary (json)</option>
259 <option value="uilist-xml">List of UIDs (XML)</option> 330 <option value="docsum-xml">Document Summary (xml)</option>
260 <option value="uilist-text">List of UIDs (plain text)</option> 331 <option value="full-text">Full Document (text)</option>
332 <option value="full-xml">Full Document (xml)</option>
333 <option value="uilist-text">Unique Identifier List (text)</option>
334 <option value="uilist-xml">Unique Identifier List (xml)</option>
335 </param>
336 </when>
337 <when value="grasp">
338 <param name="output_format" type="select" label="Output Format">
339 <option value="docsum-json">Document Summary (json)</option>
340 <option value="docsum-xml">Document Summary (xml)</option>
341 <option value="full-text">Full Document (text)</option>
342 <option value="full-xml">Full Document (xml)</option>
343 <option value="uilist-text">Unique Identifier List (text)</option>
344 <option value="uilist-xml">Unique Identifier List (xml)</option>
261 </param> 345 </param>
262 </when> 346 </when>
263 <when value="gtr"> 347 <when value="gtr">
264 <param name="output_format" type="select" label="Output Format"> 348 <param name="output_format" type="select" label="Output Format">
265 <option value="docsum-xml">Document summary</option> 349 <option value="docsum-json">Document Summary (json)</option>
266 <option value="uilist-xml">List of UIDs (XML)</option> 350 <option value="docsum-xml">Document Summary (xml)</option>
267 <option value="uilist-text">List of UIDs (plain text)</option> 351 <option value="full-text">Full Document (text)</option>
352 <option value="full-xml">Full Document (xml)</option>
353 <option value="uilist-text">Unique Identifier List (text)</option>
354 <option value="uilist-xml">Unique Identifier List (xml)</option>
268 </param> 355 </param>
269 </when> 356 </when>
270 <when value="homologene"> 357 <when value="homologene">
271 <param name="output_format" type="select" label="Output Format"> 358 <param name="output_format" type="select" label="Output Format">
272 <option value="docsum-xml">Document summary</option> 359 <option value="alignmentscores-text">Alignment Scores (text)</option>
273 <option value="uilist-xml">List of UIDs (XML)</option> 360 <option value="docsum-json">Document Summary (json)</option>
274 <option value="uilist-text">List of UIDs (plain text)</option> 361 <option value="docsum-xml">Document Summary (xml)</option>
275 <option value="null-asn.1">text ASN.1</option> 362 <option value="fasta-fasta">FASTA (fasta)</option>
276 <option value="null-xml">XML</option> 363 <option value="full-text">Full Document (text)</option>
277 <option value="alignmentscores-text">Alignment scores</option> 364 <option value="full-xml">Full Document (xml)</option>
278 <option value="fasta-text">FASTA</option> 365 <option value="homologene-text">Homologene Report (text)</option>
279 <option value="homologene-text">HomoloGene</option> 366 <option value="native-asn.1">HG-Entry (asn.1)</option>
280 </param> 367 <option value="native-text">Homologene List (text)</option>
281 </when> 368 <option value="native-xml">Entrez-Homologene-Set (xml)</option>
282 <when value="journals"> 369 <option value="uilist-text">Unique Identifier List (text)</option>
283 <param name="output_format" type="select" label="Output Format"> 370 <option value="uilist-xml">Unique Identifier List (xml)</option>
284 <option value="docsum-xml">Document summary</option>
285 <option value="uilist-xml">List of UIDs (XML)</option>
286 <option value="uilist-text">List of UIDs (plain text)</option>
287 </param> 371 </param>
288 </when> 372 </when>
289 <when value="medgen"> 373 <when value="medgen">
290 <param name="output_format" type="select" label="Output Format"> 374 <param name="output_format" type="select" label="Output Format">
291 <option value="docsum-xml">Document summary</option> 375 <option value="docsum-json">Document Summary (json)</option>
292 <option value="uilist-xml">List of UIDs (XML)</option> 376 <option value="docsum-xml">Document Summary (xml)</option>
293 <option value="uilist-text">List of UIDs (plain text)</option> 377 <option value="full-text">Full Document (text)</option>
378 <option value="full-xml">Full Document (xml)</option>
379 <option value="uilist-text">Unique Identifier List (text)</option>
380 <option value="uilist-xml">Unique Identifier List (xml)</option>
294 </param> 381 </param>
295 </when> 382 </when>
296 <when value="mesh"> 383 <when value="mesh">
297 <param name="output_format" type="select" label="Output Format"> 384 <param name="output_format" type="select" label="Output Format">
298 <option value="docsum-xml">Document summary</option> 385 <option value="docsum-json">Document Summary (json)</option>
299 <option value="uilist-xml">List of UIDs (XML)</option> 386 <option value="docsum-xml">Document Summary (xml)</option>
300 <option value="uilist-text">List of UIDs (plain text)</option> 387 <option value="full-text">Full Document (text)</option>
301 <option value="full-text">Full record</option> 388 <option value="full-text">Full Record (text)</option>
389 <option value="full-xml">Full Document (xml)</option>
390 <option value="native-text">MeSH Report (text)</option>
391 <option value="native-xml">RecordSet (xml)</option>
392 <option value="uilist-text">Unique Identifier List (text)</option>
393 <option value="uilist-xml">Unique Identifier List (xml)</option>
302 </param> 394 </param>
303 </when> 395 </when>
304 <when value="ncbisearch"> 396 <when value="ncbisearch">
305 <param name="output_format" type="select" label="Output Format"> 397 <param name="output_format" type="select" label="Output Format">
306 <option value="docsum-xml">Document summary</option> 398 <option value="docsum-json">Document Summary (json)</option>
307 <option value="uilist-xml">List of UIDs (XML)</option> 399 <option value="docsum-xml">Document Summary (xml)</option>
308 <option value="uilist-text">List of UIDs (plain text)</option> 400 <option value="full-text">Full Document (text)</option>
401 <option value="full-xml">Full Document (xml)</option>
402 <option value="uilist-text">Unique Identifier List (text)</option>
403 <option value="uilist-xml">Unique Identifier List (xml)</option>
309 </param> 404 </param>
310 </when> 405 </when>
311 <when value="nlmcatalog"> 406 <when value="nlmcatalog">
312 <param name="output_format" type="select" label="Output Format"> 407 <param name="output_format" type="select" label="Output Format">
313 <option value="docsum-xml">Document summary</option> 408 <option value="docsum-json">Document Summary (json)</option>
314 <option value="uilist-xml">List of UIDs (XML)</option> 409 <option value="docsum-xml">Document Summary (xml)</option>
315 <option value="uilist-text">List of UIDs (plain text)</option> 410 <option value="full-text">Full Document (text)</option>
316 <option value="null-text">Full record</option> 411 <option value="full-xml">Full Document (xml)</option>
317 <option value="null-xml">XML</option> 412 <option value="native-text">Full Record (text)</option>
413 <option value="native-xml">NLMCatalogRecordSet (xml)</option>
414 <option value="uilist-text">Unique Identifier List (text)</option>
415 <option value="uilist-xml">Unique Identifier List (xml)</option>
318 </param> 416 </param>
319 </when> 417 </when>
320 <when value="nuccore"> 418 <when value="nuccore">
321 <param name="output_format" type="select" label="Output Format"> 419 <param name="output_format" type="select" label="Output Format">
322 <option value="docsum-xml">Document summary</option> 420 <option value="acc-text">Accession Number (text)</option>
323 <option value="uilist-xml">List of UIDs (XML)</option> 421 <option value="docsum-json">Document Summary (json)</option>
324 <option value="uilist-text">List of UIDs (plain text)</option> 422 <option value="docsum-xml">Document Summary (xml)</option>
325 <option value="null-text">text ASN.1</option> 423 <option value="est-xml">EST Report (xml)</option>
326 <option value="null-asn.1">binary ASN.1</option> 424 <option value="fasta-fasta">FASTA (fasta)</option>
327 <option value="native-xml">Full record in XML</option> 425 <option value="fasta-xml">TinySeq (xml)</option>
328 <option value="acc-text">Accession number(s)</option> 426 <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
329 <option value="fasta-text">FASTA</option> 427 <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
330 <option value="fasta-xml">TinySeq XML</option> 428 <option value="ft-text">Feature Table (text)</option>
331 <option value="seqid-text">SeqID string</option> 429 <option value="full-text">Full Document (text)</option>
332 <option value="gb-text">GenBank flat file</option> 430 <option value="full-xml">Full Document (xml)</option>
333 <option value="gb-xml">GBSeq XML</option> 431 <option value="gb-text">GenBank Flatfile (text)</option>
334 <option value="gbc-xml">INSDSeq XML</option> 432 <option value="gb-xml">GBSet (xml)</option>
335 <option value="ft-text">Feature table</option> 433 <option value="gbc-xml">INSDSet (xml)</option>
336 <option value="gbwithparts-text">GenBank flat file with full sequence (contigs)</option> 434 <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
337 <option value="fasta_cds_na-text">CDS nucleotide FASTA</option> 435 <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
338 <option value="fasta_cds_aa-text">CDS protein FASTA</option> 436 <option value="gp-text">GenPept Flatfile (text)</option>
437 <option value="gp-xml">GBSet (xml)</option>
438 <option value="gpc-xml">INSDSet (xml)</option>
439 <option value="gss-text">GSS Report (text)</option>
440 <option value="ipg-text">Identical Protein Report (text)</option>
441 <option value="ipg-xml">IPGReportSet (xml)</option>
442 <option value="native-text">Seq-entry (text)</option>
443 <option value="native-xml">Bioseq-set (xml)</option>
444 <option value="seqid-asn.1">Seq-id (asn.1)</option>
445 <option value="uilist-text">Unique Identifier List (text)</option>
446 <option value="uilist-xml">Unique Identifier List (xml)</option>
339 </param> 447 </param>
340 </when> 448 </when>
341 <when value="nucest"> 449 <when value="nucest">
342 <param name="output_format" type="select" label="Output Format"> 450 <param name="output_format" type="select" label="Output Format">
343 <option value="docsum-xml">Document summary</option> 451 <option value="acc-text">Accession Number (text)</option>
344 <option value="uilist-xml">List of UIDs (XML)</option> 452 <option value="docsum-json">Document Summary (json)</option>
345 <option value="uilist-text">List of UIDs (plain text)</option> 453 <option value="docsum-xml">Document Summary (xml)</option>
346 <option value="null-text">text ASN.1</option> 454 <option value="est-xml">EST Report (xml)</option>
347 <option value="null-asn.1">binary ASN.1</option> 455 <option value="fasta-fasta">FASTA (fasta)</option>
348 <option value="native-xml">Full record in XML</option> 456 <option value="fasta-xml">TinySeq (xml)</option>
349 <option value="acc-text">Accession number(s)</option> 457 <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
350 <option value="fasta-text">FASTA</option> 458 <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
351 <option value="fasta-xml">TinySeq XML</option> 459 <option value="ft-text">Feature Table (text)</option>
352 <option value="seqid-text">SeqID string</option> 460 <option value="full-text">Full Document (text)</option>
353 <option value="gb-text">GenBank flat file</option> 461 <option value="full-xml">Full Document (xml)</option>
354 <option value="gb-xml">GBSeq XML</option> 462 <option value="gb-text">GenBank Flatfile (text)</option>
355 <option value="gbc-xml">INSDSeq XML</option> 463 <option value="gb-xml">GBSet (xml)</option>
356 <option value="est-text">EST report</option> 464 <option value="gbc-xml">INSDSet (xml)</option>
465 <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
466 <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
467 <option value="gp-text">GenPept Flatfile (text)</option>
468 <option value="gp-xml">GBSet (xml)</option>
469 <option value="gpc-xml">INSDSet (xml)</option>
470 <option value="gss-text">GSS Report (text)</option>
471 <option value="ipg-text">Identical Protein Report (text)</option>
472 <option value="ipg-xml">IPGReportSet (xml)</option>
473 <option value="native-text">Seq-entry (text)</option>
474 <option value="native-xml">Bioseq-set (xml)</option>
475 <option value="seqid-asn.1">Seq-id (asn.1)</option>
476 <option value="uilist-text">Unique Identifier List (text)</option>
477 <option value="uilist-xml">Unique Identifier List (xml)</option>
357 </param> 478 </param>
358 </when> 479 </when>
359 <when value="nucgss"> 480 <when value="nucgss">
360 <param name="output_format" type="select" label="Output Format"> 481 <param name="output_format" type="select" label="Output Format">
361 <option value="docsum-xml">Document summary</option> 482 <option value="acc-text">Accession Number (text)</option>
362 <option value="uilist-xml">List of UIDs (XML)</option> 483 <option value="docsum-json">Document Summary (json)</option>
363 <option value="uilist-text">List of UIDs (plain text)</option> 484 <option value="docsum-xml">Document Summary (xml)</option>
364 <option value="null-text">text ASN.1</option> 485 <option value="est-xml">EST Report (xml)</option>
365 <option value="null-asn.1">binary ASN.1</option> 486 <option value="fasta-fasta">FASTA (fasta)</option>
366 <option value="native-xml">Full record in XML</option> 487 <option value="fasta-xml">TinySeq (xml)</option>
367 <option value="acc-text">Accession number(s)</option> 488 <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
368 <option value="fasta-text">FASTA</option> 489 <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
369 <option value="fasta-xml">TinySeq XML</option> 490 <option value="ft-text">Feature Table (text)</option>
370 <option value="seqid-text">SeqID string</option> 491 <option value="full-text">Full Document (text)</option>
371 <option value="gb-text">GenBank flat file</option> 492 <option value="full-xml">Full Document (xml)</option>
372 <option value="gb-xml">GBSeq XML</option> 493 <option value="gb-text">GenBank Flatfile (text)</option>
373 <option value="gbc-xml">INSDSeq XML</option> 494 <option value="gb-xml">GBSet (xml)</option>
374 <option value="gss-text">GSS report</option> 495 <option value="gbc-xml">INSDSet (xml)</option>
496 <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
497 <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
498 <option value="gp-text">GenPept Flatfile (text)</option>
499 <option value="gp-xml">GBSet (xml)</option>
500 <option value="gpc-xml">INSDSet (xml)</option>
501 <option value="gss-text">GSS Report (text)</option>
502 <option value="ipg-text">Identical Protein Report (text)</option>
503 <option value="ipg-xml">IPGReportSet (xml)</option>
504 <option value="native-text">Seq-entry (text)</option>
505 <option value="native-xml">Bioseq-set (xml)</option>
506 <option value="seqid-asn.1">Seq-id (asn.1)</option>
507 <option value="uilist-text">Unique Identifier List (text)</option>
508 <option value="uilist-xml">Unique Identifier List (xml)</option>
509 </param>
510 </when>
511 <when value="nucleotide">
512 <param name="output_format" type="select" label="Output Format">
513 <option value="acc-text">Accession Number (text)</option>
514 <option value="docsum-json">Document Summary (json)</option>
515 <option value="docsum-xml">Document Summary (xml)</option>
516 <option value="est-xml">EST Report (xml)</option>
517 <option value="fasta-fasta">FASTA (fasta)</option>
518 <option value="fasta-xml">TinySeq (xml)</option>
519 <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
520 <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
521 <option value="ft-text">Feature Table (text)</option>
522 <option value="full-text">Full Document (text)</option>
523 <option value="full-xml">Full Document (xml)</option>
524 <option value="gb-text">GenBank Flatfile (text)</option>
525 <option value="gb-xml">GBSet (xml)</option>
526 <option value="gbc-xml">INSDSet (xml)</option>
527 <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
528 <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
529 <option value="gp-text">GenPept Flatfile (text)</option>
530 <option value="gp-xml">GBSet (xml)</option>
531 <option value="gpc-xml">INSDSet (xml)</option>
532 <option value="gss-text">GSS Report (text)</option>
533 <option value="ipg-text">Identical Protein Report (text)</option>
534 <option value="ipg-xml">IPGReportSet (xml)</option>
535 <option value="native-text">Seq-entry (text)</option>
536 <option value="native-xml">Bioseq-set (xml)</option>
537 <option value="seqid-asn.1">Seq-id (asn.1)</option>
538 <option value="uilist-text">Unique Identifier List (text)</option>
539 <option value="uilist-xml">Unique Identifier List (xml)</option>
375 </param> 540 </param>
376 </when> 541 </when>
377 <when value="omim"> 542 <when value="omim">
378 <param name="output_format" type="select" label="Output Format"> 543 <param name="output_format" type="select" label="Output Format">
379 <option value="docsum-xml">Document summary</option> 544 <option value="docsum-json">Document Summary (json)</option>
380 <option value="uilist-xml">List of UIDs (XML)</option> 545 <option value="docsum-xml">Document Summary (xml)</option>
381 <option value="uilist-text">List of UIDs (plain text)</option> 546 <option value="full-text">Full Document (text)</option>
547 <option value="full-xml">Full Document (xml)</option>
548 <option value="uilist-text">Unique Identifier List (text)</option>
549 <option value="uilist-xml">Unique Identifier List (xml)</option>
550 </param>
551 </when>
552 <when value="orgtrack">
553 <param name="output_format" type="select" label="Output Format">
554 <option value="docsum-json">Document Summary (json)</option>
555 <option value="docsum-xml">Document Summary (xml)</option>
556 <option value="full-text">Full Document (text)</option>
557 <option value="full-xml">Full Document (xml)</option>
558 <option value="uilist-text">Unique Identifier List (text)</option>
559 <option value="uilist-xml">Unique Identifier List (xml)</option>
382 </param> 560 </param>
383 </when> 561 </when>
384 <when value="pcassay"> 562 <when value="pcassay">
385 <param name="output_format" type="select" label="Output Format"> 563 <param name="output_format" type="select" label="Output Format">
386 <option value="docsum-xml">Document summary</option> 564 <option value="docsum-json">Document Summary (json)</option>
387 <option value="uilist-xml">List of UIDs (XML)</option> 565 <option value="docsum-xml">Document Summary (xml)</option>
388 <option value="uilist-text">List of UIDs (plain text)</option> 566 <option value="full-text">Full Document (text)</option>
567 <option value="full-xml">Full Document (xml)</option>
568 <option value="uilist-text">Unique Identifier List (text)</option>
569 <option value="uilist-xml">Unique Identifier List (xml)</option>
389 </param> 570 </param>
390 </when> 571 </when>
391 <when value="pccompound"> 572 <when value="pccompound">
392 <param name="output_format" type="select" label="Output Format"> 573 <param name="output_format" type="select" label="Output Format">
393 <option value="docsum-xml">Document summary</option> 574 <option value="docsum-json">Document Summary (json)</option>
394 <option value="uilist-xml">List of UIDs (XML)</option> 575 <option value="docsum-xml">Document Summary (xml)</option>
395 <option value="uilist-text">List of UIDs (plain text)</option> 576 <option value="full-text">Full Document (text)</option>
577 <option value="full-xml">Full Document (xml)</option>
578 <option value="uilist-text">Unique Identifier List (text)</option>
579 <option value="uilist-xml">Unique Identifier List (xml)</option>
396 </param> 580 </param>
397 </when> 581 </when>
398 <when value="pcsubstance"> 582 <when value="pcsubstance">
399 <param name="output_format" type="select" label="Output Format"> 583 <param name="output_format" type="select" label="Output Format">
400 <option value="docsum-xml">Document summary</option> 584 <option value="docsum-json">Document Summary (json)</option>
401 <option value="uilist-xml">List of UIDs (XML)</option> 585 <option value="docsum-xml">Document Summary (xml)</option>
402 <option value="uilist-text">List of UIDs (plain text)</option> 586 <option value="full-text">Full Document (text)</option>
587 <option value="full-xml">Full Document (xml)</option>
588 <option value="uilist-text">Unique Identifier List (text)</option>
589 <option value="uilist-xml">Unique Identifier List (xml)</option>
403 </param> 590 </param>
404 </when> 591 </when>
405 <when value="pmc"> 592 <when value="pmc">
406 <param name="output_format" type="select" label="Output Format"> 593 <param name="output_format" type="select" label="Output Format">
407 <option value="docsum-xml">Document summary</option> 594 <option value="docsum-json">Document Summary (json)</option>
408 <option value="uilist-xml">List of UIDs (XML)</option> 595 <option value="docsum-xml">Document Summary (xml)</option>
409 <option value="uilist-text">List of UIDs (plain text)</option> 596 <option value="full-text">Full Document (text)</option>
410 <option value="null-xml">XML</option> 597 <option value="full-xml">Full Document (xml)</option>
411 <option value="medline-text">MEDLINE</option> 598 <option value="medline-text">MEDLINE (text)</option>
599 <option value="native-xml">pmc-articleset (xml)</option>
600 <option value="uilist-text">Unique Identifier List (text)</option>
601 <option value="uilist-xml">Unique Identifier List (xml)</option>
412 </param> 602 </param>
413 </when> 603 </when>
414 <when value="popset"> 604 <when value="popset">
415 <param name="output_format" type="select" label="Output Format"> 605 <param name="output_format" type="select" label="Output Format">
416 <option value="docsum-xml">Document summary</option> 606 <option value="docsum-json">Document Summary (json)</option>
417 <option value="uilist-xml">List of UIDs (XML)</option> 607 <option value="docsum-xml">Document Summary (xml)</option>
418 <option value="uilist-text">List of UIDs (plain text)</option> 608 <option value="full-text">Full Document (text)</option>
419 <option value="null-text">text ASN.1</option> 609 <option value="full-xml">Full Document (xml)</option>
420 <option value="null-asn.1">binary ASN.1</option> 610 <option value="uilist-text">Unique Identifier List (text)</option>
421 <option value="native-xml">Full record in XML</option> 611 <option value="uilist-xml">Unique Identifier List (xml)</option>
422 <option value="acc-text">Accession number(s)</option>
423 <option value="fasta-text">FASTA</option>
424 <option value="fasta-xml">TinySeq XML</option>
425 <option value="seqid-text">SeqID string</option>
426 <option value="gb-text">GenBank flat file</option>
427 <option value="gb-xml">GBSeq XML</option>
428 <option value="gbc-xml">INSDSeq XML</option>
429 </param> 612 </param>
430 </when> 613 </when>
431 <when value="probe"> 614 <when value="probe">
432 <param name="output_format" type="select" label="Output Format"> 615 <param name="output_format" type="select" label="Output Format">
433 <option value="docsum-xml">Document summary</option> 616 <option value="docsum-json">Document Summary (json)</option>
434 <option value="uilist-xml">List of UIDs (XML)</option> 617 <option value="docsum-xml">Document Summary (xml)</option>
435 <option value="uilist-text">List of UIDs (plain text)</option> 618 <option value="full-text">Full Document (text)</option>
619 <option value="full-xml">Full Document (xml)</option>
620 <option value="uilist-text">Unique Identifier List (text)</option>
621 <option value="uilist-xml">Unique Identifier List (xml)</option>
436 </param> 622 </param>
437 </when> 623 </when>
438 <when value="protein"> 624 <when value="protein">
439 <param name="output_format" type="select" label="Output Format"> 625 <param name="output_format" type="select" label="Output Format">
440 <option value="docsum-xml">Document summary</option> 626 <option value="docsum-json">Document Summary (json)</option>
441 <option value="uilist-xml">List of UIDs (XML)</option> 627 <option value="docsum-xml">Document Summary (xml)</option>
442 <option value="uilist-text">List of UIDs (plain text)</option> 628 <option value="full-text">Full Document (text)</option>
443 <option value="null-text">text ASN.1</option> 629 <option value="full-xml">Full Document (xml)</option>
444 <option value="null-asn.1">binary ASN.1</option> 630 <option value="uilist-text">Unique Identifier List (text)</option>
445 <option value="native-xml">Full record in XML</option> 631 <option value="uilist-xml">Unique Identifier List (xml)</option>
446 <option value="acc-text">Accession number(s)</option>
447 <option value="fasta-text">FASTA</option>
448 <option value="fasta-xml">TinySeq XML</option>
449 <option value="seqid-text">SeqID string</option>
450 <option value="ft-text">Feature table</option>
451 <option value="gp-text">GenPept flat file</option>
452 <option value="gp-xml">GBSeq XML</option>
453 <option value="gpc-xml">INSDSeq XML</option>
454 <option value="ipg-xml">Identical Protein XML</option>
455 </param> 632 </param>
456 </when> 633 </when>
457 <when value="proteinclusters"> 634 <when value="proteinclusters">
458 <param name="output_format" type="select" label="Output Format"> 635 <param name="output_format" type="select" label="Output Format">
459 <option value="docsum-xml">Document summary</option> 636 <option value="docsum-json">Document Summary (json)</option>
460 <option value="uilist-xml">List of UIDs (XML)</option> 637 <option value="docsum-xml">Document Summary (xml)</option>
461 <option value="uilist-text">List of UIDs (plain text)</option> 638 <option value="full-text">Full Document (text)</option>
639 <option value="full-xml">Full Document (xml)</option>
640 <option value="uilist-text">Unique Identifier List (text)</option>
641 <option value="uilist-xml">Unique Identifier List (xml)</option>
462 </param> 642 </param>
463 </when> 643 </when>
464 <when value="pubmed"> 644 <when value="pubmed">
465 <param name="output_format" type="select" label="Output Format"> 645 <param name="output_format" type="select" label="Output Format">
466 <option value="docsum-xml">Document summary</option> 646 <option value="abstract-xml">Abstract (xml)</option>
467 <option value="uilist-xml">List of UIDs (XML)</option> 647 <option value="docsum-json">Document Summary (json)</option>
468 <option value="uilist-text">List of UIDs (plain text)</option> 648 <option value="docsum-xml">Document Summary (xml)</option>
469 <option value="null-asn.1">text ASN.1</option> 649 <option value="full-text">Full Document (text)</option>
470 <option value="null-xml">XML</option> 650 <option value="full-xml">Full Document (xml)</option>
471 <option value="medline-text">MEDLINE</option> 651 <option value="medline-text">MEDLINE (text)</option>
472 <option value="uilist-text">PMID list</option> 652 <option value="native-asn.1">Pubmed-entry (asn.1)</option>
473 <option value="abstract-text">Abstract</option> 653 <option value="native-xml">PubmedArticleSet (xml)</option>
654 <option value="uilist-text">Unique Identifier List (text)</option>
655 <option value="uilist-xml">Unique Identifier List (xml)</option>
474 </param> 656 </param>
475 </when> 657 </when>
476 <when value="pubmedhealth"> 658 <when value="pubmedhealth">
477 <param name="output_format" type="select" label="Output Format"> 659 <param name="output_format" type="select" label="Output Format">
478 <option value="docsum-xml">Document summary</option> 660 <option value="docsum-json">Document Summary (json)</option>
479 <option value="uilist-xml">List of UIDs (XML)</option> 661 <option value="docsum-xml">Document Summary (xml)</option>
480 <option value="uilist-text">List of UIDs (plain text)</option> 662 <option value="full-text">Full Document (text)</option>
663 <option value="full-xml">Full Document (xml)</option>
664 <option value="uilist-text">Unique Identifier List (text)</option>
665 <option value="uilist-xml">Unique Identifier List (xml)</option>
666 </param>
667 </when>
668 <when value="seqannot">
669 <param name="output_format" type="select" label="Output Format">
670 <option value="docsum-json">Document Summary (json)</option>
671 <option value="docsum-xml">Document Summary (xml)</option>
672 <option value="full-text">Full Document (text)</option>
673 <option value="full-xml">Full Document (xml)</option>
674 <option value="uilist-text">Unique Identifier List (text)</option>
675 <option value="uilist-xml">Unique Identifier List (xml)</option>
481 </param> 676 </param>
482 </when> 677 </when>
483 <when value="snp"> 678 <when value="snp">
484 <param name="output_format" type="select" label="Output Format"> 679 <param name="output_format" type="select" label="Output Format">
485 <option value="docsum-xml">Document summary</option> 680 <option value="chr-text">Chromosome Report (text)</option>
486 <option value="uilist-xml">List of UIDs (XML)</option> 681 <option value="docset-text">Summary (text)</option>
487 <option value="uilist-text">List of UIDs (plain text)</option> 682 <option value="docsum-json">Document Summary (json)</option>
488 <option value="null-asn.1">text ASN.1</option> 683 <option value="docsum-xml">Document Summary (xml)</option>
489 <option value="null-xml">XML</option> 684 <option value="fasta-fasta">FASTA (fasta)</option>
490 <option value="flt-text">Flat file</option> 685 <option value="flt-text">Flat File (text)</option>
491 <option value="fasta-text">FASTA</option> 686 <option value="full-text">Full Document (text)</option>
492 <option value="rsr-text">RS Cluster report</option> 687 <option value="full-xml">Full Document (xml)</option>
493 <option value="ssexemplar-text">SS Exemplar list</option> 688 <option value="native-asn.1">Rs (asn.1)</option>
494 <option value="chr-text">Chromosome report</option> 689 <option value="native-xml">ExchangeSet (xml)</option>
495 <option value="docset-text">Summary</option> 690 <option value="rsr-tabular">RS Cluster Report (tabular)</option>
496 <option value="uilist-xml">UID list (XML)</option> 691 <option value="ssexemplar-text">SS Exemplar List (text)</option>
497 <option value="uilist-text">UID list (text)</option> 692 <option value="uilist-text">Unique Identifier List (text)</option>
693 <option value="uilist-xml">Unique Identifier List (xml)</option>
498 </param> 694 </param>
499 </when> 695 </when>
500 <when value="sra"> 696 <when value="sra">
501 <param name="output_format" type="select" label="Output Format"> 697 <param name="output_format" type="select" label="Output Format">
502 <option value="docsum-xml">Document summary</option> 698 <option value="docsum-json">Document Summary (json)</option>
503 <option value="uilist-xml">List of UIDs (XML)</option> 699 <option value="docsum-xml">Document Summary (xml)</option>
504 <option value="uilist-text">List of UIDs (plain text)</option> 700 <option value="full-text">Full Document (text)</option>
505 <option value="full-xml">XML</option> 701 <option value="full-xml">Full Document (xml)</option>
702 <option value="native-xml">EXPERIMENT_PACKAGE_SET (xml)</option>
703 <option value="runinfo-xml">SraRunInfo (xml)</option>
704 <option value="uilist-text">Unique Identifier List (text)</option>
705 <option value="uilist-xml">Unique Identifier List (xml)</option>
506 </param> 706 </param>
507 </when> 707 </when>
508 <when value="structure"> 708 <when value="structure">
509 <param name="output_format" type="select" label="Output Format"> 709 <param name="output_format" type="select" label="Output Format">
510 <option value="docsum-xml">Document summary</option> 710 <option value="docsum-json">Document Summary (json)</option>
511 <option value="uilist-xml">List of UIDs (XML)</option> 711 <option value="docsum-xml">Document Summary (xml)</option>
512 <option value="uilist-text">List of UIDs (plain text)</option> 712 <option value="full-text">Full Document (text)</option>
713 <option value="full-xml">Full Document (xml)</option>
714 <option value="mmdb-asn.1">Ncbi-mime-asn1 strucseq (asn.1)</option>
715 <option value="native-text">MMDB Report (text)</option>
716 <option value="native-xml">RecordSet (xml)</option>
717 <option value="uilist-text">Unique Identifier List (text)</option>
718 <option value="uilist-xml">Unique Identifier List (xml)</option>
513 </param> 719 </param>
514 </when> 720 </when>
515 <when value="taxonomy"> 721 <when value="taxonomy">
516 <param name="output_format" type="select" label="Output Format"> 722 <param name="output_format" type="select" label="Output Format">
517 <option value="docsum-xml">Document summary</option> 723 <option value="docsum-json">Document Summary (json)</option>
518 <option value="uilist-xml">List of UIDs (XML)</option> 724 <option value="docsum-xml">Document Summary (xml)</option>
519 <option value="uilist-text">List of UIDs (plain text)</option> 725 <option value="full-text">Full Document (text)</option>
520 <option value="null-xml">XML</option> 726 <option value="full-xml">Full Document (xml)</option>
521 <option value="uilist-xml">TaxID list (XML)</option> 727 <option value="native-text">Taxonomy List (text)</option>
522 <option value="uilist-text">TaxID list (text)</option> 728 <option value="native-xml">TaxaSet (xml)</option>
729 <option value="uilist-text">Unique Identifier List (text)</option>
730 <option value="uilist-xml">Unique Identifier List (xml)</option>
731 </param>
732 </when>
733 <when value="unigene">
734 <param name="output_format" type="select" label="Output Format">
735 <option value="docsum-json">Document Summary (json)</option>
736 <option value="docsum-xml">Document Summary (xml)</option>
737 <option value="full-text">Full Document (text)</option>
738 <option value="full-xml">Full Document (xml)</option>
739 <option value="uilist-text">Unique Identifier List (text)</option>
740 <option value="uilist-xml">Unique Identifier List (xml)</option>
523 </param> 741 </param>
524 </when> 742 </when>
525 </conditional> 743 </conditional>
744 </xml>
745
746 <xml name="efetch_formats">
747 <change_format>
748 <when input="output_format" value="fasta_cds_na-fasta" format="fasta"/>
749 <when input="output_format" value="ipg-xml" format="xml"/>
750 <when input="output_format" value="gbc-xml" format="xml"/>
751 <when input="output_format" value="medline-text" format="text"/>
752 <when input="output_format" value="native-None" format="text"/>
753 <when input="output_format" value="mmdb-asn.1" format="asn1"/>
754 <when input="output_format" value="seqid-asn.1" format="asn1"/>
755 <when input="output_format" value="acc-text" format="text"/>
756 <when input="output_format" value="summary-text" format="text"/>
757 <when input="output_format" value="gene_fasta-fasta" format="fasta"/>
758 <when input="output_format" value="native-text" format="text"/>
759 <when input="output_format" value="gbwithparts-text" format="text"/>
760 <when input="output_format" value="gpc-xml" format="xml"/>
761 <when input="output_format" value="fasta_cds_aa-fasta" format="fasta"/>
762 <when input="output_format" value="gp-text" format="text"/>
763 <when input="output_format" value="gss-text" format="text"/>
764 <when input="output_format" value="ipg-text" format="text"/>
765 <when input="output_format" value="uilist-xml" format="xml"/>
766 <when input="output_format" value="docsum-xml" format="xml"/>
767 <when input="output_format" value="rsr-tabular" format="tabular"/>
768 <when input="output_format" value="uilist-text" format="text"/>
769 <when input="output_format" value="gb-text" format="text"/>
770 <when input="output_format" value="chr-text" format="text"/>
771 <when input="output_format" value="alignmentscores-text" format="text"/>
772 <when input="output_format" value="native-asn.1" format="asn1"/>
773 <when input="output_format" value="gp-xml" format="xml"/>
774 <when input="output_format" value="tabular-tabular" format="tabular"/>
775 <when input="output_format" value="ssexemplar-text" format="text"/>
776 <when input="output_format" value="docsum-json" format="json"/>
777 <when input="output_format" value="fasta-xml" format="xml"/>
778 <when input="output_format" value="runinfo-xml" format="xml"/>
779 <when input="output_format" value="flt-text" format="text"/>
780 <when input="output_format" value="fasta-fasta" format="fasta"/>
781 <when input="output_format" value="full-text" format="text"/>
782 <when input="output_format" value="gb-xml" format="xml"/>
783 <when input="output_format" value="abstract-xml" format="xml"/>
784 <when input="output_format" value="full-xml" format="xml"/>
785 <when input="output_format" value="ft-text" format="text"/>
786 <when input="output_format" value="homologene-text" format="text"/>
787 <when input="output_format" value="est-xml" format="xml"/>
788 <when input="output_format" value="gene_table-xml" format="xml"/>
789 <when input="output_format" value="docset-text" format="text"/>
790 <when input="output_format" value="native-xml" format="xml"/>
791 </change_format>
526 </xml> 792 </xml>
527 <token name="@LIST_OR_HIST@"> 793 <token name="@LIST_OR_HIST@">
528 #if $query_source.qss == "history": 794 #if $query_source.qss == "history":
529 --history_file $query_source.history_file 795 --history_file $query_source.history_file
530 #else if $query_source.qss == "id_file": 796 #else if $query_source.qss == "id_file":
574 </xml> 840 </xml>
575 <xml name="linkname"> 841 <xml name="linkname">
576 <param name="linkname" type="select" label="To NCBI Database"> 842 <param name="linkname" type="select" label="To NCBI Database">
577 <!-- TODO: http://eutils.ncbi.nlm.nih.gov/entrez/query/static/entrezlinks.html --> 843 <!-- TODO: http://eutils.ncbi.nlm.nih.gov/entrez/query/static/entrezlinks.html -->
578 </param> 844 </param>
579 </xml> 845 </xml>
580 </macros> 846 </macros>