Mercurial > repos > iuc > ncbi_eutils_efetch

comparison efetch.xml @ 1:a42fa980bbd5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 2d92a2be8d8725e76a32600e332dfb67cc0db10b
author iuc
date Mon, 02 Nov 2015 12:59:23 -0500
parents 1b4ac594d02a
children aa88712a7536
comparison
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0:1b4ac594d02a 1:a42fa980bbd5
3 <description>fetch records from NCBI</description> 3 <description>fetch records from NCBI</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <expand macro="stdio"/>
9 <version_command>python efetch.py --version</version_command> 8 <version_command>python efetch.py --version</version_command>
10 <command interpreter="python"><![CDATA[efetch.py 9 <command detect_errors="aggressive" interpreter="python"><![CDATA[efetch.py
11 $db.db_select 10 $db.db_select
12 11
13 @LIST_OR_HIST@ 12 @LIST_OR_HIST@
14 13
15 #set retmode, rettype = str($db.output_format).split('-') 14 #set retmode, rettype = str($db.output_format).split('-')
75 <param name="db_select" value="taxonomy"/> 74 <param name="db_select" value="taxonomy"/>
76 <param name="output_format" value="docsum-xml"/> 75 <param name="output_format" value="docsum-xml"/>
77 <param name="qss" value="id_list"/> 76 <param name="qss" value="id_list"/>
78 <param name="id_list" value="10239"/> 77 <param name="id_list" value="10239"/>
79 <output name="default" file="viruses.tax.xml"> 78 <output name="default" file="viruses.tax.xml">
80 <!--<discovered_datasets designation="0" ftytpe="xml" file="viruses.tax.xml" />-->
81 </output> 79 </output>
82 </test> 80 </test>
83 </tests> 81 </tests>
84 <help><![CDATA[ 82 <help><![CDATA[
85 NCBI Entrez EFetch 83 NCBI Entrez EFetch