Mercurial > repos > iuc > ncbi_datasets

diff datasets_genome.xml @ 2:2753a5786114 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit 4e4505fabd0c591267605362625ae9be65f70b22"
author iuc
date Thu, 15 Jul 2021 15:45:43 +0000
parents c6009f4d7261
children c87df3f9e19d
line wrap: on
line diff
--- a/datasets_genome.xml	Thu Jul 15 13:35:06 2021 +0000
+++ b/datasets_genome.xml	Thu Jul 15 15:45:43 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="datasets-download-genome" name="NCBI datasets download genome" profile="@PROFILE@" license="@LICENSE" version="@TOOL_VERSION@">
+<tool id="datasets_download_genome" name="NCBI datasets download genome" profile="@PROFILE@" license="@LICENSE" version="@TOOL_VERSION@">
     <description>Download assembled genomes from NCBI</description>
     <macros>
         <import>macros.xml</import>
@@ -9,7 +9,7 @@
 datasets download genome $subcommand.download_by
 #if $subcommand.download_by == 'accession':
     #if $subcommand.text_or_file.text_or_file == 'text':
-        '$subcommand.text_or_file.accession'
+        #echo " ".join(f"'{x}'" for x in $subcommand.text_or_file.accession.split(' ') if x)
     #else
         --inputfile '$subcommand.text_or_file.inputfile'
     #end if
@@ -106,7 +106,7 @@
                 <param name="download_by" value="accession"></param>
                 <conditional name="text_or_file">
                     <param name="text_or_file" value="text"></param>
-                    <param name="accession" value="GCF_000013305.1,GCF_000007445.1"></param>
+                    <param name="accession" value="GCF_000013305.1 GCF_000007445.1"></param>
                 </conditional>
             </conditional>
             <param name="dehydrated" value="false"/>