Mercurial > repos > iuc > mummer_mummerplot

comparison mummerplot.xml @ 1:447a66c9f6e1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 96608e94742d17cb73d57201099ff5f5abbef276"
author iuc
date Fri, 24 Jan 2020 20:55:44 +0000
parents f52a30265797
children e89cbb3671a2
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0:f52a30265797 1:447a66c9f6e1
1 <tool id="mummer_mummerplot" name="Mummerplot" version="@MUMMER_VERSION@"> 1 <tool id="mummer_mummerplot" name="Mummerplot" version="@MUMMER_VERSION@@WRAPPER_VERSION@">
2 <description>Generate 2-D dotplot of aligned sequences</description> 2 <description>Generate 2-D dotplot of aligned sequences</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <expand macro="requirements">
7 <requirement type="package" version="5.2.3">gnuplot</requirement> 7 <expand macro="gnuplot_requirement"/>
8 </expand> 8 </expand>
9 <command detect_errors="exit_code"> 9 <command detect_errors="exit_code">
10 <![CDATA[ 10 <![CDATA[
11 ln -s $reference_sequence reference.fa && 11 ln -s $reference_sequence reference.fa &&
12 ln -s $query_sequence query.fa && 12 ln -s $query_sequence query.fa &&
32 #if $range.custom == 'yes': 32 #if $range.custom == 'yes':
33 -x [$range.min_x:$range.max_x] 33 -x [$range.min_x:$range.max_x]
34 -y [$range.min_y:$range.max_y] 34 -y [$range.min_y:$range.max_y]
35 #end if 35 #end if
36 '$delta' 36 '$delta'
37 @MUMMER_GNUPLOT_MANUAL@
37 ]]> 38 ]]>
38 </command> 39 </command>
39 <inputs> 40 <inputs>
40 <param name="delta" type="data" format="tabular" label="Match File" /> 41 <param name="delta" type="data" format="tabular" label="Match File" />
41 <param name="reference_sequence" type="data" format="fasta" label="Reference Sequence" /> 42 <param name="reference_sequence" type="data" format="fasta" label="Reference Sequence" />