Mercurial > repos > iuc > mummer_mummer

comparison mummer.xml @ 3:4066407ccf6f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 7ea9a5c6d9e7212c38be96baa6615af1ea9d5a8e"
author iuc
date Tue, 13 Oct 2020 21:33:26 +0000
parents e03e870e785b
children 97963d40235d
comparison
equal deleted inserted replaced
2:e03e870e785b 3:4066407ccf6f
15 $force 15 $force
16 $chars 16 $chars
17 $print_length 17 $print_length
18 $substring 18 $substring
19 $position 19 $position
20 -threads \${GALAXY_SLOTS:-1}
21 -qthreads \${GALAXY_SLOTS:-1}
20 #if $options.advanced == 'enable' 22 #if $options.advanced == 'enable'
21 -k '$options.suffix' 23 -k '$options.suffix'
22 -threads '$options.threads'
23 -qthreads '$options.qthreads'
24 -suflink '$options.suflink' 24 -suflink '$options.suflink'
25 -child '$options.child' 25 -child '$options.child'
26 -skip '$options.skip' 26 -skip '$options.skip'
27 -kmer '$options.kmer' 27 -kmer '$options.kmer'
28 #end if 28 #end if
76 <option value="defaults">Use defaults</option> 76 <option value="defaults">Use defaults</option>
77 <option value="enable">Select additional options</option> 77 <option value="enable">Select additional options</option>
78 </param> 78 </param>
79 <when value="enable" > 79 <when value="enable" >
80 <param name="suffix" type="integer" argument="-k" value="1" label="Suffix" help="Sampled suffix positions. (-k)" /> 80 <param name="suffix" type="integer" argument="-k" value="1" label="Suffix" help="Sampled suffix positions. (-k)" />
81 <param name="threads" type="integer" argument="-threads" value="3" label="Threads"
82 help="Number of threads to use for -maxmatch; only valid if above parameter is greater than one. (-threads)" />
83 <param name="qthreads" type="integer" argument="-qthreads" value="3" label="Qthreads" help="Number of threads to use for queries. (-qthreads)" />
84 <param name="suflink" type="select" label="Suflink" help="Use suffix links in the index and during search? (-suflink)" > 81 <param name="suflink" type="select" label="Suflink" help="Use suffix links in the index and during search? (-suflink)" >
85 <option value="0">No</option> 82 <option value="0">No</option>
86 <option value="1">Yes</option> 83 <option value="1">Yes</option>
87 </param> 84 </param>
88 <param name="child" type="select" label="Child" help="Use child table in the index and during search? (-child)" > 85 <param name="child" type="select" label="Child" help="Use child table in the index and during search? (-child)" >