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comparison multiqc.xml @ 28:e99aaf069191 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 7f250f4b9484eceef360ba62ef519c94b56c0b97
author iuc
date Wed, 19 Feb 2025 16:00:26 +0000
parents b7e8663db1ec
children ef6bd40a30d2
comparison
equal deleted inserted replaced
27:b7e8663db1ec 28:e99aaf069191
35 <import>bbduk_plugin.xml</import> 35 <import>bbduk_plugin.xml</import>
36 <import>megahit_plugin.xml</import> 36 <import>megahit_plugin.xml</import>
37 <import>nonpareil_plugin.xml</import> 37 <import>nonpareil_plugin.xml</import>
38 <import>gtdbtk_plugin.xml</import> 38 <import>gtdbtk_plugin.xml</import>
39 <import>sambamba_plugin.xml</import> 39 <import>sambamba_plugin.xml</import>
40 <import>image_content_plugin.xml</import>
40 </macros> 41 </macros>
41 <expand macro="bio_tools"/> 42 <expand macro="bio_tools"/>
42 <expand macro="requirements"/> 43 <expand macro="requirements"/>
43 <version_command>multiqc --version</version_command> 44 <version_command>multiqc --version</version_command>
44 <command detect_errors="aggressive"> 45 <command detect_errors="aggressive">
192 ln -s '$file' '$file_path' && 193 ln -s '$file' '$file_path' &&
193 more $file && 194 more $file &&
194 #end for 195 #end for
195 #end if 196 #end if
196 #end for 197 #end for
198
199 #if str($image_content_input) != "None"
200 @IMAGE_CONTENT_COMMAND@
201 #end if
197 202
198 multiqc multiqc_WDir 203 multiqc multiqc_WDir
199 --filename 'report' 204 --filename 'report'
200 205
201 #if str($title) 206 #if str($title)
462 <param argument="ylab" label="Y axis label" type="text"/> 467 <param argument="ylab" label="Y axis label" type="text"/>
463 <param name="input" type="data" format="tabular,tsv" multiple="true" label="Data files"/> 468 <param name="input" type="data" format="tabular,tsv" multiple="true" label="Data files"/>
464 </when> 469 </when>
465 </conditional> 470 </conditional>
466 </repeat> 471 </repeat>
472 <expand macro="image_content_form"/>
467 <param name="title" type="text" value="" optional="true" label="Report title" help="It is printed as page header"> 473 <param name="title" type="text" value="" optional="true" label="Report title" help="It is printed as page header">
468 <sanitizer invalid_char=""> 474 <sanitizer invalid_char="">
469 <valid initial="string.letters,string.digits"> 475 <valid initial="string.letters,string.digits">
470 <add value=","/> 476 <add value=","/>
471 <add value=":"/> 477 <add value=":"/>
535 <expand macro="bbduk_test"/> 541 <expand macro="bbduk_test"/>
536 <expand macro="megahit_test"/> 542 <expand macro="megahit_test"/>
537 <expand macro="nonpareil_test"/> 543 <expand macro="nonpareil_test"/>
538 <expand macro="gtdbtk_test"/> 544 <expand macro="gtdbtk_test"/>
539 <expand macro="sambamba_test"/> 545 <expand macro="sambamba_test"/>
540
541 <!--expand macro="vcftools_test"/> Does not work, did it ever worked? --> 546 <!--expand macro="vcftools_test"/> Does not work, did it ever worked? -->
542 547
543 </tests> 548 </tests>
544 <help><![CDATA[ 549 <help><![CDATA[
545 **What it does** 550 **What it does**