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comparison test-data/bbduk.txt @ 27:b7e8663db1ec draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
author iuc
date Tue, 18 Feb 2025 23:17:45 +0000
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26:1206c725e45a 27:b7e8663db1ec
1 Executing jgi.BBDuk [in=forward.fastq.gz, out=/data/jwd05e/main/079/061/79061727/outputs/dataset_1abda394-9c76-4c97-9712-e52be8f79694.dat, ref=dataset_5c3ad7b3-f75c-4f5a-a70e-15ae843bc97c.dat.fa, k=27, rcomp=t, maskmiddle=t, minkmerhits=1, minkmerfraction=0.0, mincovfraction=0.0, hammingdistance=0, qhdist=0, editdistance=0, forbidn=f, trimfailures=f, findbestmatch=f, skipr1=f, skipr2=f, t=1]
2 Version 39.08
3
4 Set threads to 1
5 Changed from ASCII-33 to ASCII-64 on input quality B (Q33) for base N at lines 1 and 3, position 0 while prescanning.
6 Unspecified format for output /data/jwd05e/main/079/061/79061727/outputs/dataset_1abda394-9c76-4c97-9712-e52be8f79694.dat; defaulting to fastq.
7 0.398 seconds.
8 Initial:
9 Memory: max=3672m, total=270m, free=243m, used=27m
10
11 Added 2970 kmers; time: 0.549 seconds.
12 Memory: max=3672m, total=270m, free=238m, used=32m
13
14 Input is being processed as unpaired
15 Changed from ASCII-33 to ASCII-64 on input ;: 59 -> 28
16 Started output streams: 0.052 seconds.
17 Processing time: 0.106 seconds.
18
19 Input: 100 reads 10000 bases.
20 Contaminants: 0 reads (0.00%) 0 bases (0.00%)
21 Total Removed: 0 reads (0.00%) 0 bases (0.00%)
22 Result: 100 reads (100.00%) 10000 bases (100.00%)
23
24 Time: 0.711 seconds.
25 Reads Processed: 100 0.14k reads/sec
26 Bases Processed: 10000 0.01m bases/sec