Mercurial > repos > iuc > multiqc
comparison gtdbtk_plugin.xml @ 27:b7e8663db1ec draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
| author | iuc |
|---|---|
| date | Tue, 18 Feb 2025 23:17:45 +0000 |
| parents | |
| children |
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| 26:1206c725e45a | 27:b7e8663db1ec |
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| 1 <macros> | |
| 2 <token name="@GTDBTK_COMMAND@"><![CDATA[ | |
| 3 #set $pattern = "user_genome\tclassification\tclosest_genome_reference\tclosest_genome_reference_radius\tclosest_genome_taxonomy\tclosest_genome_ani" | |
| 4 @LN_FILES@ | |
| 5 ]]></token> | |
| 6 <xml name="gtdbtk_form"> | |
| 7 <param name="input" type="data" format="tsv" multiple="true" label="Output of GTDB-Tk" help="It should contain 'user_genome\tclassification\tclosest_genome_reference\tclosest_genome_reference_radius\tclosest_genome_taxonomy\tclosest_genome_ani'"/> | |
| 8 </xml> | |
| 9 <xml name="gtdbtk_test"> | |
| 10 <test expect_num_outputs="3"> | |
| 11 <repeat name="results"> | |
| 12 <conditional name="software_cond"> | |
| 13 <param name="software" value="gtdbtk"/> | |
| 14 <param name="input" value="gtdbtk.tsv"/> | |
| 15 </conditional> | |
| 16 </repeat> | |
| 17 <param name="title" value="Title of the report"/> | |
| 18 <param name="comment" value="Commment for the report"/> | |
| 19 <param name="flat" value="true"/> | |
| 20 <param name="export" value="true"/> | |
| 21 <output name="html_report"> | |
| 22 <assert_contents> | |
| 23 <has_text text="Title of the report"/> | |
| 24 <has_text text="Commment for the report"/> | |
| 25 <has_text text="GTDB-Tk"/> | |
| 26 <has_text text="genome_1_fna_gz"/> | |
| 27 </assert_contents> | |
| 28 </output> | |
| 29 <output_collection name="plots" type="list" count="0"/> | |
| 30 </test> | |
| 31 </xml> | |
| 32 </macros> |