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comparison diamond_plugin.xml @ 27:b7e8663db1ec draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
author iuc
date Tue, 18 Feb 2025 23:17:45 +0000
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26:1206c725e45a 27:b7e8663db1ec
1 <macros>
2 <token name="@DIAMOND_COMMAND@"><![CDATA[
3 #for $file in $repeat.software_cond.input
4 @ESCAPE_IDENTIFIER@
5 #set file_path = os.path.join($software_dir, 'diamond.log')
6 ln -s '$file' '$file_path' &&
7 #end for
8 ]]></token>
9 <xml name="diamond_form">
10 <param name="input" type="data" format="txt" multiple="true" label="Log output of DIAMOND"/>
11 </xml>
12 <xml name="diamond_test">
13 <test expect_num_outputs="3">
14 <repeat name="results">
15 <conditional name="software_cond">
16 <param name="software" value="diamond"/>
17 <param name="input" value="diamond.log"/>
18 </conditional>
19 </repeat>
20 <param name="title" value="Title of the report"/>
21 <param name="comment" value="Commment for the report"/>
22 <param name="flat" value="true"/>
23 <param name="export" value="true"/>
24 <output name="html_report">
25 <assert_contents>
26 <has_text text="Title of the report"/>
27 <has_text text="Commment for the report"/>
28 <has_text text="DIAMOND"/>
29 <has_text text="Queries aligned"/>
30 </assert_contents>
31 </output>
32 <output name="stats">
33 <assert_contents>
34 <has_text text="Sample"/>
35 <has_text text="diamond_0"/>
36 <has_text text="diamond-queries_aligned"/>
37 <has_text text="1"/>
38 <has_n_lines n="2"/>
39 <has_n_columns n="2"/>
40 </assert_contents>
41 </output>
42 <output_collection name="plots" type="list" count="0"/>
43 </test>
44 </xml>
45 </macros>