Mercurial > repos > iuc > multiqc

comparison test-data/quast.tsv @ 0:b437798cb165 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
author iuc
date Tue, 24 Oct 2017 06:29:40 -0400
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comparison
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-1:000000000000 0:b437798cb165
1 Assembly 14892_1#15
2 # contigs (>= 0 bp) 545
3 # contigs (>= 1000 bp) 376
4 # contigs (>= 5000 bp) 242
5 # contigs (>= 10000 bp) 215
6 # contigs (>= 25000 bp) 181
7 # contigs (>= 50000 bp) 123
8 Total length (>= 0 bp) 18465341
9 Total length (>= 1000 bp) 18373173
10 Total length (>= 5000 bp) 18079934
11 Total length (>= 10000 bp) 17893099
12 Total length (>= 25000 bp) 17353907
13 Total length (>= 50000 bp) 15112131
14 # contigs 467
15 Largest contig 435484
16 Total length 18435361
17 Reference length 18916112
18 GC (%) 48.17
19 Reference GC (%) 48.21
20 N50 115136
21 NG50 112874
22 N75 62262
23 NG75 56990
24 L50 48
25 LG50 50
26 L75 100
27 LG75 106
28 # misassemblies 107
29 # misassembled contigs 82
30 Misassembled contigs length 4540800
31 # local misassemblies 132
32 # unaligned contigs 8 + 59 part
33 Unaligned length 88446
34 Genome fraction (%) 95.482
35 Duplication ratio 1.016
36 # N's per 100 kbp 929.55
37 # mismatches per 100 kbp 262.21
38 # indels per 100 kbp 33.75
39 # genes 7280 + 968 part
40 Largest alignment 356982
41 NA50 102129
42 NGA50 99244
43 NA75 54365
44 NGA75 51757
45 LA50 56
46 LGA50 59
47 LA75 117
48 LGA75 124