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comparison test-data/flexbar.txt @ 0:b437798cb165 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
author iuc
date Tue, 24 Oct 2017 06:29:40 -0400
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-1:000000000000 0:b437798cb165
1
2 ________ __
3 / ____/ /__ _ __/ /_ ____ ______
4 / /_ / / _ \| |/ / __ \/ __ `/ ___/
5 / __/ / / __/> </ /_/ / /_/ / /
6 /_/ /_/\___/_/|_/_.___/\__._/_/
7
8 Flexbar - flexible barcode and adapter removal, version 3.0
9 Developed with SeqAn, the library for sequence analysis
10
11 Available on github.com/seqan/flexbar
12
13
14 Local time: Mon Jun 5 13:20:34 2017
15
16 Number of threads: 1
17 Bundled fragments: 256
18
19 Target name: result_right
20 File type: fasta
21 Reads file: reads.fasta
22 Adapter file: adapters.fasta
23
24 max-uncalled: 0
25 min-read-length: 10
26
27 adapter-trim-end: RIGHT
28 adapter-min-overlap: 4
29 adapter-error-rate: 0.1
30 adapter-match: 1
31 adapter-mismatch: -1
32 adapter-gap: -6
33
34 Adapter: Sequence:
35 ad1 CGTCTT
36
37
38 Processing reads ...done.
39
40 Elapsed time: < 1 sec
41
42
43 Adapter removal statistics
44 ==========================
45 Adapter: Overlap removal: Full length:
46 ad1 11 10
47
48 Min, max, mean and median overlap: 5 / 6 / 5 / 6
49
50
51 Output file statistics
52 ======================
53 Read file: result_right.fasta
54 written reads 10
55 short reads 3
56
57
58 Filtering statistics
59 ====================
60 Processed reads 13
61 skipped due to uncalled bases 0
62 short prior to adapter removal 0
63 finally skipped short reads 3
64 Discarded reads overall 3
65 Remaining reads 10 (76%)
66
67 Processed bases 422
68 Remaining bases 231 (54% of input)
69
70
71 Flexbar completed adapter removal.