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comparison multiqc.xml @ 10:b0ce3f403e30 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit e22f6c00774c9ec9f29773eba43fd509d55031e4
author iuc
date Sun, 05 Aug 2018 18:26:10 -0400
parents a531ae71d397
children 46d7ad9aa59f
comparison
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9:a531ae71d397 10:b0ce3f403e30
1 <tool id="multiqc" name="MultiQC" version="@WRAPPER_VERSION@.0"> 1 <tool id="multiqc" name="MultiQC" version="@WRAPPER_VERSION@.1">
2 <description>aggregate results from bioinformatics analyses into a single report</description> 2 <description>aggregate results from bioinformatics analyses into a single report</description>
3 <macros> 3 <macros>
4 <token name="@WRAPPER_VERSION@">1.5</token> 4 <token name="@WRAPPER_VERSION@">1.5</token>
5 <token name="@ESCAPE_IDENTIFIER@"> 5 <token name="@ESCAPE_IDENTIFIER@">
6 <![CDATA[ 6 <![CDATA[
304 #set file_path = os.path.join($repeat_dir, 'file_' + str($k) + '.pos.DupRate.xls') 304 #set file_path = os.path.join($repeat_dir, 'file_' + str($k) + '.pos.DupRate.xls')
305 ln -s '$file' '$file_path' && 305 ln -s '$file' '$file_path' &&
306 #end for 306 #end for
307 #elif str($repeat2.type.type) == "infer_experiment" 307 #elif str($repeat2.type.type) == "infer_experiment"
308 #set $pattern = "Fraction of reads explained by" 308 #set $pattern = "Fraction of reads explained by"
309 #for $k, $file in enumerate($repeat2.type.input) 309 #for $file in $repeat2.type.input
310 #set file_path = os.path.join($repeat_dir, 'file_' + str($k) + '_infer_experiment.txt') 310 @ESCAPE_IDENTIFIER@
311 #set file_path = os.path.join($repeat_dir, str($identifier))
311 grep -q "$pattern" $file || die "'$pattern' not found in the file" && 312 grep -q "$pattern" $file || die "'$pattern' not found in the file" &&
312 ln -s '$file' '$file_path' && 313 ln -s '$file' '$file_path' &&
313 #end for 314 #end for
314 #end if 315 #end if
315 #end for 316 #end for