Mercurial > repos > iuc > multiqc

comparison test-data/aligner_soft_stats.tabular @ 8:6ef9e2d46af4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 13875b17a3a5259b9705529a3597bea12828cb20
author iuc
date Fri, 20 Apr 2018 01:06:06 -0400
parents 8cb0a6c3166c
children a531ae71d397
comparison
equal deleted inserted replaced
7:6b377ade9c97 8:6ef9e2d46af4
1 Sample Cutadapt_percent_trimmed-1 Kallisto_percent_aligned-1-1 Kallisto_pseudoaligned_reads-1 Kallisto_fragment_length-1 Bismark_aligned_reads-1 Bismark_percent_aligned-2 Bowtie 2_overall_alignment_rate-1-1 HiCExplorer_Pairs_considered-1 HiCExplorer_Min_rest_site_distance-1 HiCExplorer_Mapped-1 HiCExplorer_Max_rest_site_distance-1 HiCExplorer_Pairs_used-1 HISAT2_overall_alignment_rate-2 STAR_uniquely_mapped_percent-1 STAR_uniquely_mapped-1 Tophat_overall_aligned_percent-1 Tophat_aligned_not_multimapped_discordant-1 1 Sample Cutadapt_mqc-generalstats-percent_trimmed Kallisto_mqc-generalstats-pseudoaligned_reads Kallisto_mqc-generalstats-fragment_length Kallisto_mqc-generalstats-percent_aligned Bismark_mqc-generalstats-aligned_reads Bismark_mqc-generalstats-percent_aligned Bowtie 2_mqc-generalstats-overall_alignment_rate HiCExplorer_mqc-generalstats-Mapped HiCExplorer_mqc-generalstats-Pairs_used HiCExplorer_mqc-generalstats-Min_rest_site_distance HiCExplorer_mqc-generalstats-Pairs_considered HiCExplorer_mqc-generalstats-Max_rest_site_distance HISAT2_mqc-generalstats-overall_alignment_rate STAR_mqc-generalstats-uniquely_mapped_percent STAR_mqc-generalstats-uniquely_mapped Tophat_mqc-generalstats-overall_aligned_percent Tophat_mqc-generalstats-aligned_not_multimapped_discordant
2 HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R1 5.880883098970165 2 HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R1 5.880883098970165
3 HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R1_val_1 83.65114569077758 48531088.0 167.866 3 HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R1_val_1 48531088.0 167.866 83.65114569077758
4 HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R2 31.038195169381073 4 HS002-PE-R00059_BD0U5YACXX.RHM066_CGATGT_L002_R2 31.038195169381073
5 HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R1 7.7267901650356645 5 HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R1 7.7267901650356645
6 HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R1_val_1 84.50278473550448 59280920.0 169.418 6 HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R1_val_1 59280920.0 169.418 84.50278473550448
7 HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R2 32.18485266309055 7 HS002-PE-R00059_BD0U5YACXX.RHM067_CAGATC_L002_R2 32.18485266309055
8 align_0 220558.0 69.71079996207212 8 bismark_SE_report 220558.0 69.71079996207212
9 bowtie2_1 98.33 9 bowtie2_1 98.33
10 bowtie2_2 98.31 10 bowtie2_2 98.31
11 hicexplorer_3_small_test 99983.0 303.0 0.08778492343698428 800.0 0.3732734564876029 11 hicexplorer_hicexplorer1_small_test 0.08778492343698428 0.3732734564876029 303.0 99983.0 800.0
12 hicexplorer_3_small_test_rf 99983.0 152.0 0.08778492343698428 1500.0 0.35940109818669175 12 hicexplorer_hicexplorer2_small_test_rf 0.08778492343698428 0.35940109818669175 152.0 99983.0 1500.0
13 hisat2_1 96.15 13 hisat2_1 96.15
14 hisat2_2 96.15 14 hisat2_2 96.15
15 star_log 89.0 89.0 15 star_log 89.0 89.0
16 tophat 99.5 307733.0 16 tophat_align 99.5 307733.0