Mercurial > repos > iuc > multiqc
comparison pycoqc_plugin.xml @ 24:0771dee34cff draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
| author | iuc |
|---|---|
| date | Mon, 02 Sep 2024 14:22:19 +0000 |
| parents | |
| children | 24002c7e6092 |
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| 23:d01bcfd04189 | 24:0771dee34cff |
|---|---|
| 1 <macros> | |
| 2 <token name="@PYCOQC_COMMAND@"><![CDATA[ | |
| 3 #set $pattern = "\"pycoqc\":" | |
| 4 @LN_FILES@ | |
| 5 ]]></token> | |
| 6 <xml name="pycoqc_form"> | |
| 7 <param name="input" type="data" format="txt,json" multiple="true" label="Output of PycoQC"/> | |
| 8 </xml> | |
| 9 <!-- add here your test files and tests, the more stringent the better --> | |
| 10 <xml name="pycoqc_test"> | |
| 11 <test expect_num_outputs="2"> | |
| 12 <repeat name="results"> | |
| 13 <conditional name="software_cond"> | |
| 14 <param name="software" value="pycoqc"/> | |
| 15 <param name="input" value="pycoqc.json"/> | |
| 16 </conditional> | |
| 17 </repeat> | |
| 18 <param name="title" value="Title of the report"/> | |
| 19 <param name="comment" value="Commment for the report"/> | |
| 20 <!-- <param name="flat" value="true"/> --> | |
| 21 <output name="html_report"> | |
| 22 <assert_contents> | |
| 23 <has_text text="Title of the report"/> | |
| 24 <has_text text="Commment for the report"/> | |
| 25 <has_text text="General Statistics"/> | |
| 26 <has_text text="pycoqc_count_plot"/> | |
| 27 <has_text text="pycoqc_read_len_plot"/> | |
| 28 <has_text text="pycoqc_read_qual_plot"/> | |
| 29 </assert_contents> | |
| 30 </output> | |
| 31 <output name="stats" ftype="tabular"> | |
| 32 <assert_contents> | |
| 33 <has_text text="pycoQC_mqc_generalstats_pycoqc_passed_median_read_length"/> | |
| 34 <has_text text="pycoqc_json"/> | |
| 35 </assert_contents> | |
| 36 </output> | |
| 37 </test> | |
| 38 </xml> | |
| 39 </macros> |