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comparison bcftools_plugin.xml @ 24:0771dee34cff draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
author iuc
date Mon, 02 Sep 2024 14:22:19 +0000
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children 24002c7e6092
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23:d01bcfd04189 24:0771dee34cff
1 <macros>
2 <token name="@BCFTOOLS_COMMAND@"><![CDATA[
3 #set $pattern = "This file was produced by bcftools stats"
4 @LN_FILES@
5 ]]></token>
6 <xml name="bcftools_form">
7 <param name="input" type="data" format="txt" multiple="true" label="Output of BCFtools" help="It should contain 'This file was produced by bcftools stats'"/>
8 </xml>
9 <!-- add here your test files and tests, the more stringent the better -->
10 <xml name="bcftools_test">
11 <test expect_num_outputs="3">
12 <repeat name="results">
13 <conditional name="software_cond">
14 <param name="software" value="bcftools"/>
15 <param name="input" value="bcftools.txt"/>
16 </conditional>
17 </repeat>
18 <param name="title" value="Title of the report"/>
19 <param name="comment" value="Commment for the report"/>
20 <param name="flat" value="true"/>
21 <param name="export" value="true"/>
22 <output name="html_report">
23 <assert_contents>
24 <has_text text="Title of the report"/>
25 <has_text text="Commment for the report"/>
26 <has_text text="bcftools_stats_indel-lengths"/>
27 </assert_contents>
28 </output>
29 <output name="stats">
30 <assert_contents>
31 <has_text text="Stats_mqc_generalstats_bcftools_stats_number_of_records"/>
32 <has_text text="Stats_mqc_generalstats_bcftools_stats_number_of_SNPs"/>
33 <has_text text="Test1"/>
34 <has_text text="72330"/>
35 <has_n_lines n="2"/>
36 <has_n_columns n="8"/>
37 </assert_contents>
38 </output>
39 <output_collection name="plots" type="list" count="0"/>
40 </test>
41 </xml>
42 </macros>