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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 4095773348da6faeb6096f58785b66898b09befa
author iuc
date Fri, 10 Oct 2025 20:11:35 +0000
parents b7e8663db1ec
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
1 Executing jgi.BBDuk [in=forward.fastq.gz, out=/data/jwd05e/main/079/061/79061727/outputs/dataset_1abda394-9c76-4c97-9712-e52be8f79694.dat, ref=dataset_5c3ad7b3-f75c-4f5a-a70e-15ae843bc97c.dat.fa, k=27, rcomp=t, maskmiddle=t, minkmerhits=1, minkmerfraction=0.0, mincovfraction=0.0, hammingdistance=0, qhdist=0, editdistance=0, forbidn=f, trimfailures=f, findbestmatch=f, skipr1=f, skipr2=f, t=1]
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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2 Version 39.08
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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3
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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4 Set threads to 1
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
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5 Changed from ASCII-33 to ASCII-64 on input quality B (Q33) for base N at lines 1 and 3, position 0 while prescanning.
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
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6 Unspecified format for output /data/jwd05e/main/079/061/79061727/outputs/dataset_1abda394-9c76-4c97-9712-e52be8f79694.dat; defaulting to fastq.
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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7 0.398 seconds.
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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8 Initial:
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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9 Memory: max=3672m, total=270m, free=243m, used=27m
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
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10
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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11 Added 2970 kmers; time: 0.549 seconds.
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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12 Memory: max=3672m, total=270m, free=238m, used=32m
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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13
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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14 Input is being processed as unpaired
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
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15 Changed from ASCII-33 to ASCII-64 on input ;: 59 -> 28
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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16 Started output streams: 0.052 seconds.
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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17 Processing time: 0.106 seconds.
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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18
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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19 Input: 100 reads 10000 bases.
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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20 Contaminants: 0 reads (0.00%) 0 bases (0.00%)
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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21 Total Removed: 0 reads (0.00%) 0 bases (0.00%)
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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22 Result: 100 reads (100.00%) 10000 bases (100.00%)
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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23
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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24 Time: 0.711 seconds.
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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25 Reads Processed: 100 0.14k reads/sec
b7e8663db1ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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26 Bases Processed: 10000 0.01m bases/sec