# HG changeset patch
# User iuc
# Date 1491405949 14400
# Node ID 3a93d1903e5ddbf809ef03b171825978dbf5c5ac
# Parent  80a634da878d46b861dfea9a969540a16b7afbd4
Uploaded

diff -r 80a634da878d -r 3a93d1903e5d multigps.xml
--- a/multigps.xml	Wed Apr 05 11:18:17 2017 -0400
+++ b/multigps.xml	Wed Apr 05 11:25:49 2017 -0400
@@ -158,21 +158,24 @@
 #for $condition_items in $condition_repeat:
     #for $signal_items in $condition_items.signal_repeat:
         #if str($signal_items.fixedreadcount_cond.fixedreadcount_select) == 'yes':
-${signal_items.signal}	Signal	${signal_items.signal.ext.upper()}	${signal_items.condition_name}	${signal_items.replicate_name}	${signal_items.experiment_type}	$signal_items.fixedreadcount_cond.fixedreadcount
+            #set frc = $signal_items.fixedreadcount_cond.fixedreadcount
         #else:
-${signal_items.signal}	Signal	${signal_items.signal.ext.upper()}	${signal_items.condition_name}	${signal_items.replicate_name}	${signal_items.experiment_type}	
+            #set frc = ''
         #end if
+${signal_items.signal}	Signal	${signal_items.signal.ext.upper()}	${signal_items.condition_name}	${signal_items.replicate_name}	${signal_items.experiment_type}	${frc}
     #end for
     #for $control_items in $condition_items.control_repeat:
-        #if str($control_items.specify_replicate_name_cond.specify_replicate_name) == 'yes' and str($control_items.fixedreadcount_cond.fixedreadcount_select) == 'yes':
-${control_items.control}	Control	${control_items.control.ext.upper()}	${control_items.condition_name}	${control_items.specify_replicate_name_cond.replicate_name}	${control_items.experiment_type}	${control_items.fixedreadcount_cond.fixedreadcount}
-        #else if str($control_items.specify_replicate_name_cond.specify_replicate_name) == 'yes' and str($control_items.fixedreadcount_cond.fixedreadcount_select) == 'no':
-${control_items.control}	Control	${control_items.control.ext.upper()}	${control_items.condition_name}	${control_items.specify_replicate_name_cond.replicate_name}	${control_items.experiment_type}	
-        #else if str($control_items.specify_replicate_name_cond.specify_replicate_name) == 'no' and str($control_items.fixedreadcount_cond.fixedreadcount_select) == 'yes':
-${control_items.control}	Control	${control_items.control.ext.upper()}	${control_items.condition_name}		${control_items.experiment_type}	${control_items.fixedreadcount_cond.fixedreadcount}
-        #else if str($control_items.specify_replicate_name_cond.specify_replicate_name) == 'no' and str($control_items.fixedreadcount_cond.fixedreadcount_select) == 'no':
-${control_items.control}	Control	${control_items.control.ext.upper()}	${control_items.condition_name}			${control_items.experiment_type}	
+        #if str($control_items.specify_replicate_name_cond.specify_replicate_name) == 'yes':
+            #set rn = $control_items.specify_replicate_name_cond.replicate_name
+        #else:
+            #set rn = ''
         #end if
+        #if str($control_items.fixedreadcount_cond.fixedreadcount_select) == 'yes':
+            #set frc $control_items.fixedreadcount_cond.fixedreadcount
+        #else:
+            #set frc = ''
+        #end if
+${control_items.control}	Control	${control_items.control.ext.upper()}	${control_items.condition_name}	${rn}	${control_items.experiment_type}	${frc}
     #end for
 #end for
 ]]>